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[174919_at]

Description CEK051GXR_rc /REP_DB=TREMBL Accession /GB=D70945 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk51g10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 17      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 509.3
(3)
P 		361.3
(-1.1)
P 		290.3
(-3)
P 		461.9
(1.7)
P 		219
B 491.7
(3)
P 		333.9
(-0.9)
P 		247.1
(-3)
P 		350.9
(-0.5)
P 		245
C 534.8
(3)
P 		303.8
(-2.3)
P 		275.4
(-3)
P 		484.1
(1.8)
P 		259
avr 511.9
(3) 		333
(-1.5) 		270.9
(-3) 		432.3
(1) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 562.3
(3)
P 		344.8
(-0.2)
P 		204.1
(-2.3)
P 		156.9
(-3)
P 		215.8
(-2.1)
P 		268.2
(-1.4)
P 		405
B 504.5
(3)
P 		286.2
(-0.9)
P 		180.7
(-2.8)
P 		234.5
(-1.8)
P 		168
(-3)
P 		291.6
(-0.8)
P 		337
C 419.7
(3)
P 		379.1
(2)
P 		224.2
(-1.7)
P 		218.3
(-1.8)
P 		169.1
(-3)
P 		210.1
(-2)
P 		251
avr 495.5
(3) 		336.7
(-0.1) 		203
(-2.6) 		203.2
(-2.6) 		184.3
(-3) 		256.6
(-1.6) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 185.4
(3)
P 		78.4
(-2.4)
P 		75.9
(-2.6)
P 		67.6
(-3)
P 		118
B 156.8
(3)
P 		82.5
(-1.5)
P 		57.3
(-3)
P 		74.8
(-1.9)
P 		100
C 177
(3)
P 		87.4
(-2.6)
P 		96
(-2.1)
P 		81.6
(-3)
P 		95
avr 173.1
(3) 		82.8
(-2.5) 		76.4
(-2.9) 		74.7
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 103.7
(1.6)
P 		122.6
(3)
P 		44.4
(-2.7)
P 		39.8
(-3)
P 		65.1
(-1.2)
P 		65.3
(-1.2)
P 		83
B 175.6
(3)
P 		95.3
(-0.7)
P 		43.9
(-3)
P 		62.1
(-2.2)
P 		68.3
(-1.9)
P 		108.7
(-0)
P 		132
C 155.6
(3)
P 		115.7
(0.9)
P 		57.1
(-2.3)
P 		43.9
(-3)
P 		54.7
(-2.4)
P 		70.3
(-1.6)
P 		112
avr 145
(3) 		111.2
(0.9) 		48.5
(-3) 		48.6
(-3) 		62.7
(-2.1) 		81.4
(-1) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174919_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21801
Sequence Type Exemplar sequence
Representative Public ID CEK051GXR NCBI
Target Description CEK051GXR_rc /REP_DB=TREMBL Accession /GB=D70945 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk51g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029042(11), NM_001029041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029042 NCBI Caenorhabditis elegans abnormal ThermoTaXis family member (ttx-1) (ttx-1) mRNA, complete cds. 11/11 None
NM_001029041 NCBI Caenorhabditis elegans abnormal ThermoTaXis family member (ttx-1) (ttx-1) mRNA, complete cds. 11/11 None
Y113G7A.6b ENSEMBL cdna:known chromosome:CEL140:V:20051730:20062171:-1 gene:Y113G7A.6 11/11 A 
Y113G7A.6a ENSEMBL cdna:known chromosome:CEL140:V:20051730:20062171:-1 gene:Y113G7A.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
M04D5.1 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20051739-20052075(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y113G7A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60478 Hypothetical protein Y113G7A.6a [Caenorhabditis elegans] ref|NP_001024212.1| abnormal ThermoTaXis family member (ttx-1) [Caenorhabditis elegans] 1.0E-150
blast AAL12001 homeodomain protein TTX-1 [Caenorhabditis elegans] 1.0E-141
blast CAB60479 Hypothetical protein Y113G7A.6b [Caenorhabditis elegans] ref|NP_001024213.1| abnormal ThermoTaXis family member (ttx-1) [Caenorhabditis elegans] 1.0E-119
blast AAL12000 homeodomain protein TTX-1 [Caenorhabditis elegans] 1.0E-116
blast CAB60478 Hypothetical protein Y113G7A.6a [Caenorhabditis elegans] ref|NP_001024212.1| abnormal ThermoTaXis family member (ttx-1) [Caenorhabditis elegans] 1.0E-112
blast CAB60479 Hypothetical protein Y113G7A.6b [Caenorhabditis elegans] ref|NP_001024213.1| abnormal ThermoTaXis family member (ttx-1) [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.0000000817356E-27
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 8.00000002536861E-28
Pfam IPR001356 EMBL-EBI Homeobox 6.6E-28
Pfam IPR001356 EMBL-EBI Homeobox 6.6E-28
Sequence
Target Sequence 
>C. ELEGANS:174919_AT
ttttcacctctttttcacacaaatctctccggtttttagtacgatgctccgatattccgg
cggaatttcggagcatcgtactgatcacaatttttcctcttttttctacgcaaaaatcaa
taatttacgcacaaaaacttcaaacttccatgattttttcccacttctttttcaattttt
ctgacatttttaggtcccaaagtccttttttcccctgaaaaatttcagtttttcacattt
ctaatatatcctacgcattccaatattattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCACCTCTTTTTCACACAAATC 202 677 45 Antisense
CACACAAATCTCTCCGGTTTTTAGT 287 191 60 Antisense
TCTCCGGTTTTTAGTACGATGCTCC 9 601 70 Antisense
GATGCTCCGATATTCCGGCGGAATT 629 413 87 Antisense
GGCGGAATTTCGGAGCATCGTACTG 228 541 103 Antisense
TTCGGAGCATCGTACTGATCACAAT 342 693 111 Antisense
GTACTGATCACAATTTTTCCTCTTT 619 459 122 Antisense
TCAAACTTCCATGATTTTTTCCCAC 474 627 184 Antisense
TGACATTTTTAGGTCCCAAAGTCCT 380 571 226 Antisense
ATTTCTAATATATCCTACGCATTCC 11 17 281 Antisense
TATCCTACGCATTCCAATATTATTG 644 657 291 Antisense
Sequence Source Affymetrix Proprietary Database