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[174917_at] Yeast hypothetical protein YPL247C like

Description CEK015HYR_rc /REP_DB=TREMBL Accession /GB=D27626 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15h11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 47      4grp_high_8_8 > 12      6grp_highest_nonorm > 41      6grp_total > 12      4grp_total > 13      6grp_highest_sub > De      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 522
1 2 3 4 range
A 794
(0.9)
P 		698.4
(-0.6)
P 		545.7
(-3)
P 		925.3
(3)
P 		380
B 624.9
(-1.7)
P 		590.2
(-2.1)
P 		512.3
(-3)
P 		1034.1
(3)
P 		522
C 766.2
(1.7)
P 		542.1
(-3)
P 		592.9
(-1.9)
P 		827.5
(3)
P 		285
avr 728.4
(-0.2) 		610.2
(-2.1) 		550.3
(-3) 		929
(3) 		379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 1051.3
(3)
P 		863.8
(0.7)
P 		665.3
(-1.7)
P 		554.7
(-3)
P 		668.6
(-1.6)
P 		581.3
(-2.7)
P 		497
B 785.7
(1)
P 		901.9
(3)
P 		743.9
(0.3)
P 		742.8
(0.3)
P 		548.9
(-3)
P 		642.2
(-1.4)
P 		353
C 632.1
(-1.4)
P 		869.3
(3)
P 		804.1
(1.8)
P 		817.3
(2)
P 		545.2
(-3)
P 		634.6
(-1.3)
P 		324
avr 823
(1.9) 		878.3
(3) 		737.8
(0.1) 		704.9
(-0.6) 		587.6
(-3) 		619.4
(-2.3) 		291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 289.1
(3)
P 		151.6
(-2.4)
P 		142.7
(-2.7)
P 		135.4
(-3)
P 		154
B 199.3
(1.8)
P 		145.8
(-1.4)
P 		118.7
(-3)
P 		220.4
(3)
P 		102
C 253.6
(3)
P 		155.9
(-2.1)
P 		206.7
(0.5)
P 		139.5
(-3)
P 		114
avr 247.3
(3) 		151.1
(-3) 		156
(-2.7) 		165.1
(-2.1) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 193.8
(-1.1)
P 		307.2
(3)
P 		144.9
(-2.8)
P 		140.7
(-3)
P 		201.8
(-0.8)
P 		141.5
(-3)
P 		167
B 273.4
(1.7)
P 		300.2
(3)
P 		180.6
(-3)
P 		196.7
(-2.2)
P 		223
(-0.9)
P 		239.5
(-0)
P 		120
C 234.3
(1.2)
P 		265.2
(3)
P 		204.7
(-0.6)
P 		164.4
(-3)
P 		176.4
(-2.3)
P 		212.4
(-0.1)
P 		101
avr 233.8
(0.2) 		290.9
(3) 		176.7
(-2.5) 		167.3
(-3) 		200.4
(-1.4) 		197.8
(-1.5) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174917_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21940
Sequence Type Exemplar sequence
Representative Public ID CEK015HYR NCBI
Target Description CEK015HYR_rc /REP_DB=TREMBL Accession /GB=D27626 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074016(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074016 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-206) (tag-206) mRNA, complete cds. 11/11 None
F53C11.7.1 ENSEMBL cdna:known chromosome:CEL140:V:13803523:13806870:-1 gene:F53C11.7 11/11 A 
F53C11.7.2 ENSEMBL cdna:known chromosome:CEL140:V:13803580:13806870:-1 gene:F53C11.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13803635-13804089(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein YPL247C like
Gene Symbol swan-2
Ensembl F53C11.7
Entrez Gene 179875 Entrez gene
SwissProt Q93759 EMBL-EBI
WormBase CE24997 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261202_AT flower pigmentation protein (AN11) at
CANINE:1598274_AT similar to WD-repeat domain protein 68 (WD-repeat protein An11 homolog) cfa
CANINE_2:CFA.6728.1.S1_AT similar to WD-repeat domain protein 68 (WD-repeat protein An11 homolog) cfa
CANINE_2:CFA.6728.1.S1_S_AT similar to WD-repeat domain protein 68 (WD-repeat protein An11 homolog) cfa
DROSOPHILA_2:1634430_AT dm
DROSGENOME1:145484_AT dm
HG-U133A:209592_S_AT WD repeat domain 68 hs
HG-U133A_2:209592_S_AT WD repeat domain 68 hs
HG-U133_PLUS_2:209592_S_AT WD repeat domain 68 hs
HG-FOCUS:209592_S_AT WD repeat domain 68 hs
HG-U133_PLUS_2:236134_AT WD repeat domain 68 hs
HG-U133B:236134_AT WD repeat domain 68 hs
HG-U133_PLUS_2:233782_AT WD repeat domain 68 hs
HG-U133B:233782_AT WD repeat domain 68 hs
HU35KSUBA:AA096491_AT WD repeat domain 68 hs
HU35KSUBB:RC_AA026385_AT WD repeat domain 68 hs
HU35KSUBC:RC_AA055631_AT WD repeat domain 68 hs
HUGENEFL:U94747_AT WD repeat domain 68 hs
U133_X3P:G12654840_3P_A_AT WD repeat domain 68 hs
U133_X3P:HS.50740.0.S1_3P_AT WD repeat domain 68 hs
U133_X3P:HS.296694.0.S1_3P_AT WD repeat domain 68 hs
U133_X3P:HS.293715.0.A1_3P_AT WD repeat domain 68 hs
U133_X3P:HS.288283.0.S3_3P_X_AT WD repeat domain 68 hs
U133_X3P:HS.288283.0.S2_3P_AT WD repeat domain 68 hs
U133_X3P:HS.288283.0.S1_3P_AT WD repeat domain 68 hs
U133_X3P:221744_3P_AT WD repeat domain 68 hs
HG-U133A_2:221744_AT WD repeat domain 68 hs
HG-U133_PLUS_2:221744_AT WD repeat domain 68 hs
HG-U133A:221744_AT WD repeat domain 68 hs
HG-U133A_2:221745_AT WD repeat domain 68 hs
HG-U133_PLUS_2:221745_AT WD repeat domain 68 hs
HG-U133A:221745_AT WD repeat domain 68 hs
HG-U133_PLUS_2:224730_AT WD repeat domain 68 hs
HG-U133B:224730_AT WD repeat domain 68 hs
HG-U133_PLUS_2:224748_AT WD repeat domain 68 hs
HG-U133B:224748_AT WD repeat domain 68 hs
HG-U95AV2:38171_AT WD repeat domain 68 hs
HG-U95AV2:41591_AT WD repeat domain 68 hs
HG-U95B:45796_AT WD repeat domain 68 hs
HG-U95B:48542_AT WD repeat domain 68 hs
HG-U95E:81518_AT WD repeat domain 68 hs
HG-U133_PLUS_2:240675_AT WD repeat domain 68 hs
HG-U133B:240675_AT WD repeat domain 68 hs
HG-U95B:43156_AT WD repeat domain 68 hs
HG-U95E:71736_AT WD repeat domain 68 hs
HU35KSUBB:RC_T99373_AT WD repeat domain 68 hs
U133_X3P:HS.189786.0.S1_3P_AT WD repeat domain 68 hs
MG-U74BV2:114699_AT WD repeat domain 68 mm
MG-U74BV2:163616_AT WD repeat domain 68 mm
MOE430B:1429151_AT WD repeat domain 68 mm
MOUSE430_2:1429151_AT WD repeat domain 68 mm
MOE430B:1429386_AT WD repeat domain 68 mm
MOUSE430_2:1429386_AT WD repeat domain 68 mm
MOE430B:1429385_AT WD repeat domain 68 mm
MOUSE430_2:1429385_AT WD repeat domain 68 mm
MOE430B:1439664_AT WD repeat domain 68 mm
MOUSE430_2:1439664_AT WD repeat domain 68 mm
MU19KSUBA:TC14838_AT WD repeat domain 68, mRNA (cDNA clone IMAGE:5009594) mm
MU19KSUBA:TC17524_AT WD repeat domain 68, mRNA (cDNA clone IMAGE:5009594) mm
MU19KSUBA:TC18959_AT WD repeat domain 68, mRNA (cDNA clone IMAGE:5009594) mm
MU19KSUBB:TC32612_AT WD repeat domain 68, mRNA (cDNA clone IMAGE:5009594) mm
MU19KSUBC:TC38137_AT WD repeat domain 68, mRNA (cDNA clone IMAGE:5009594) mm
RAE230A:1373548_AT Similar to WD-repeat protein An11 homolog (predicted) rn
RAT230_2:1373548_AT Similar to WD-repeat protein An11 homolog (predicted) rn
RG-U34A:RC_AA893857_AT Similar to WD-repeat protein An11 homolog (predicted) rn
RG-U34C:RC_AI178415_AT Similar to WD-repeat protein An11 homolog (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB02116 Hypothetical protein F53C11.7 [Caenorhabditis elegans] ref|NP_506417.1| Temporarily Assigned Gene name family member (tag-206) [Caenorhabditis elegans] 0.0
blast CAE66236 Hypothetical protein CBG11480 [Caenorhabditis briggsae] 0.0
blast AAH77453 MGC82392 protein [Xenopus laevis] gb|AAH77297.1| Cg14614-prov protein [Xenopus laevis] gb|AAH44040.1| Cg14614-prov protein [Xenopus laevis] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.68
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.5E-9
Sequence
Target Sequence 
>C. ELEGANS:174917_AT
tgttttatttttcgccctgcgagaaaaactccccgatatctccattcataattcatattt
ttaatttcagtagtaccaccgaagtgccttttcgtttctcactgaaaactgcgtatatct
ctcaaactgtctgcaacaaaaaaaatccatttgtcaatttttctcattaaaaaaccatcg
caaaatcaatttgactgttaaaatcccgcaaaatctttcgttctccgttcttctctcaac
cttggtactgttagggtcatcctaatcattgctcaatttgctcaattaaaaattaaaatt
ttctgcgcaaacaaactcaaaaatggtaataaaaataggttctatgtatgcaatattcgc
atcttattctttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTATTTTTCGCCCTGCGAGAA 478 559 18 Antisense
CTGCGAGAAAAACTCCCCGATATCT 265 235 34 Antisense
CCCCGATATCTCCATTCATAATTCA 584 261 48 Antisense
CAGTAGTACCACCGAAGTGCCTTTT 265 203 85 Antisense
GTGCCTTTTCGTTTCTCACTGAAAA 693 477 101 Antisense
GAAAACTGCGTATATCTCTCAAACT 323 355 121 Antisense
ATATCTCTCAAACTGTCTGCAACAA 283 21 132 Antisense
TTCTTCTCTCAACCTTGGTACTGTT 88 691 245 Antisense
ACCTTGGTACTGTTAGGGTCATCCT 99 85 256 Antisense
AATTTTCTGCGCAAACAAACTCAAA 550 175 314 Antisense
GCAATATTCGCATCTTATTCTTTAA 687 321 367 Antisense
Sequence Source Affymetrix Proprietary Database