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[174916_at]

Description CEK113B7R_rc /REP_DB=TREMBL Accession /GB=D73048 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk113b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 28      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 60      6grp_total > 27      4grp_total > 30      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 426.5
(3)
P 		414.6
(2.6)
P 		297.7
(-1.9)
P 		267.4
(-3)
P 		159
B 517.1
(1.6)
P 		367.6
(-2.7)
P 		357.6
(-3)
P 		567.5
(3)
P 		210
C 503.5
(3)
P 		366.5
(-1.8)
P 		330.8
(-3)
P 		458
(1.4)
P 		173
avr 482.4
(3) 		382.9
(-0.9) 		328.7
(-3) 		431
(1) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 539.4
(3)
P 		355
(-0.6)
P 		356.7
(-0.6)
P 		232.4
(-3)
P 		357.9
(-0.5)
P 		305.8
(-1.6)
P 		307
B 560
(3)
P 		354.6
(-2.1)
P 		463.8
(0.6)
P 		316.3
(-3)
P 		346.3
(-2.3)
P 		396.2
(-1)
P 		244
C 467.7
(2.9)
P 		434.6
(1.7)
P 		303.1
(-3)
P 		316.1
(-2.5)
P 		335.9
(-1.8)
P 		470
(3)
P 		167
avr 522.4
(3) 		381.4
(-0.6) 		374.5
(-0.8) 		288.3
(-3) 		346.7
(-1.5) 		390.7
(-0.4) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 155.3
(3)
P 		90
(-0.4)
P 		77.8
(-1)
P 		39.1
(-3)
P 		116
B 164.9
(3)
P 		90.8
(-2.4)
P 		82.9
(-3)
P 		120.9
(-0.2)
P 		82
C 166.7
(3)
P 		105.4
(-1.1)
P 		115.3
(-0.4)
P 		77.2
(-3)
P 		90
avr 162.3
(3) 		95.4
(-1.8) 		92
(-2.1) 		79.1
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 99.4
(0.6)
P 		126.2
(3)
P 		77.7
(-1.3)
P 		58.9
(-3)
P 		108
(1.4)
P 		74.5
(-1.6)
P 		67
B 194.9
(3)
P 		118
(-1.2)
P 		112.6
(-1.4)
P 		83.8
(-3)
P 		140.7
(0.1)
P 		147.7
(0.5)
P 		111
C 173.4
(3)
P 		132.6
(0.8)
P 		77.1
(-2.3)
P 		63.6
(-3)
P 		108.7
(-0.5)
P 		157.3
(2.1)
P 		110
avr 155.9
(3) 		125.6
(0.9) 		89.1
(-1.6) 		68.8
(-3) 		119.1
(0.5) 		126.5
(1) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20987
Sequence Type Exemplar sequence
Representative Public ID CEK113B7R NCBI
Target Description CEK113B7R_rc /REP_DB=TREMBL Accession /GB=D73048 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk113b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T07C4.8 ENSEMBL cdna:known chromosome:CEL140:III:10335058:10337395:1 gene:T07C4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10337040-10337381(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07C4.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82573 Hypothetical protein T07C4.8 [Caenorhabditis elegans] ref|NP_499284.1| CEll Death abnormality family member (ced-9) [Caenorhabditis elegans] gb|AAA20080.1| CED-9 [Caenorhabditis elegans] sp|P41958|CED9_CAEEL Apoptosis regulator ced-9 (Cell death protein 9) 1.0E-152
blast H88578 protein ced-9 [imported] - Caenorhabditis elegans 1.0E-140
blast 1OHU Chain , Structure Of Caenorhabditis Elegans Ced-9 pdb|1OHU|A Chain A, Structure Of Caenorhabditis Elegans Ced-9 2.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR000712 EMBL-EBI Apoptosis regulator Bcl-2 protein, BH 2.1E-46
Pfam IPR003093 EMBL-EBI Apoptosis regulator Bcl-2 protein, BH4 4.3E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
T07C4.8 1 255-277
Sequence
Target Sequence 
>C. ELEGANS:174916_AT
gggaaagctaggccacaaattacggctctctgtgtcgatttacgattttactgcaatttt
ttccgattgcctttttttttggccaaaccctacttccgcgtaatatcaacttttccgtgt
tctgtacatttcgtcaaaaaccctgaaaccctaacttttctcgccgtggcctagcctccc
gcttctcttccacatttccaaagtacccctgtatctcaataattcatcttcactttaact
gtctcttttcgtgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAAGCTAGGCCACAAATTACGG 498 493 34 Antisense
ACAAATTACGGCTCTCTGTGTCGAT 486 109 48 Antisense
GTCGATTTACGATTTTACTGCAATT 598 473 67 Antisense
ACTGCAATTTTTTCCGATTGCCTTT 546 97 83 Antisense
CCCTACTTCCGCGTAATATCAACTT 92 259 121 Antisense
ATATCAACTTTTCCGTGTTCTGTAC 584 19 136 Antisense
TTCCGTGTTCTGTACATTTCGTCAA 676 697 146 Antisense
ACATTTCCAAAGTACCCCTGTATCT 539 103 225 Antisense
GTACCCCTGTATCTCAATAATTCAT 150 459 236 Antisense
AATTCATCTTCACTTTAACTGTCTC 132 177 254 Antisense
ACTTTAACTGTCTCTTTTCGTGTGG 583 99 265 Antisense
Sequence Source Affymetrix Proprietary Database