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[174915_s_at] yeast protein L8167.9-like

Description CEK097BZR_rc /REP_DB=TREMBL Accession /GB=D72312 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk97b12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 68      6grp_total > 69      4grp_total > 59      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5210
1 2 3 4 range
A 4095
(-0.1)
P 		6819.1
(3)
P 		5244.7
(1.2)
P 		1609.2
(-3)
P 		5210
B 4200.6
(0.8)
P 		5178.8
(2.3)
P 		5598.5
(3)
P 		1815.2
(-3)
P 		3783
C 4117.2
(0.5)
P 		5767.9
(3)
P 		4814.2
(1.6)
P 		1729.6
(-3)
P 		4038
avr 4137.6
(0.5) 		5921.9
(3) 		5219.1
(2) 		1718
(-3) 		4204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1919
1 2 3 4 5 6 range
A 1919.4
(-1.5)
P 		2305.2
(0.2)
P 		1647.6
(-2.8)
P 		1594.9
(-3)
P 		2057.2
(-0.9)
P 		2936
(3)
P 		1341
B 2384.5
(0.5)
P 		1942.9
(-1.5)
P 		1655.4
(-2.8)
P 		1605.6
(-3)
P 		1711.4
(-2.5)
P 		2922.3
(3)
P 		1317
C 2299.9
(0.1)
P 		1873.2
(-1.2)
P 		1593.1
(-2.1)
P 		1305.2
(-3)
P 		2091.1
(-0.5)
P 		3223.8
(3)
P 		1919
avr 2201.3
(-0.2) 		2040.4
(-0.9) 		1632
(-2.5) 		1501.9
(-3) 		1953.2
(-1.2) 		3027.4
(3) 		1526
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1442
1 2 3 4 range
A 1491
(3)
P 		1480.3
(2.9)
P 		1371.1
(2.4)
P 		235.6
(-3)
P 		1255
B 1339.6
(3)
P 		1279
(2.6)
P 		1297.3
(2.7)
P 		386.8
(-3)
P 		953
C 1362.9
(1.6)
P 		1658.3
(2.9)
P 		1677.9
(3)
P 		291.6
(-3)
P 		1386
avr 1397.8
(2.6) 		1472.5
(3) 		1448.8
(2.9) 		304.7
(-3) 		1168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 827
1 2 3 4 5 6 range
A 353.8
(-3)
P 		819.8
(3)
P 		358.8
(-2.9)
P 		404.5
(-2.3)
P 		620.8
(0.4)
P 		714.8
(1.6)
P 		466
B 829.7
(0.7)
P 		646.7
(-0.9)
P 		402
(-3)
P 		425.3
(-2.8)
P 		695.3
(-0.4)
P 		1089.7
(3)
P 		688
C 852.5
(1.3)
P 		571.6
(-0.7)
P 		405.5
(-1.9)
P 		262.5
(-3)
P 		676.7
(0)
P 		1079.2
(3)
P 		817
avr 678.7
(0.2) 		679.4
(0.2) 		388.8
(-2.8) 		364.1
(-3) 		664.3
(0) 		961.2
(3) 		597
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174915_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21791
Sequence Type Exemplar sequence
Representative Public ID CEK097BZR NCBI
Target Description CEK097BZR_rc /REP_DB=TREMBL Accession /GB=D72312 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk97b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073259(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073259 NCBI Caenorhabditis elegans K07C5.4 (K07C5.4) mRNA, complete cds. 11/11 A 
SNAP00000014064 ENSEMBL cdna:SNAP chromosome:CEL140:V:10353200:10355549:-1 11/11 None
GENEFINDER00000014076 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10353200:10355549:-1 11/11 None
K07C5.4.3 ENSEMBL cdna:known chromosome:CEL140:V:10353066:10355562:-1 gene:K07C5.4 11/11 None
K07C5.4.2 ENSEMBL cdna:known chromosome:CEL140:V:10353066:10355562:-1 gene:K07C5.4 11/11 A 
K07C5.4.1 ENSEMBL cdna:known chromosome:CEL140:V:10353066:10355560:-1 gene:K07C5.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10353081-10353600(-) 100.0 100.0
Public Domain and Genome References
Gene Title yeast protein L8167.9-like
Ensembl K07C5.4
Entrez Gene 179442 Entrez gene
SwissProt Q21276 EMBL-EBI
WormBase CE06114 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262094_AT nucleolar protein Nop56, putative at
CANINE:1600145_AT similar to nucleolar protein 5A cfa
CANINE:1587055_AT similar to nucleolar protein 5A cfa
CANINE_2:CFA.15410.1.A1_S_AT similar to nucleolar protein 5A cfa
CANINE_2:CFA.15410.2.A1_AT similar to nucleolar protein 5A cfa
DROSOPHILA_2:1624345_A_AT dm
DROSGENOME1:153330_AT dm
HG-U133A_2:200874_S_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
HG-U133A:200874_S_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
HG-U133_PLUS_2:200874_S_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
HG-U133A_2:200875_S_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
HG-U133_PLUS_2:200875_S_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
HG-U133A:200875_S_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
HG-FOCUS:200875_S_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
HU35KSUBA:Y12065_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
U133_X3P:G5453793_3P_A_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
U133_X3P:HS.296585.0.S1_3P_S_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
HG-U95AV2:34882_AT nucleolar protein 5A (56kDa with KKE/D repeat) hs
MOUSE430A_2:1455035_S_AT nucleolar protein 5A mm
MOE430A:1455035_S_AT nucleolar protein 5A mm
MOUSE430_2:1455035_S_AT nucleolar protein 5A mm
MU11KSUBA:AA607833_AT nucleolar protein 5A mm
MG-U74AV2:95109_AT nucleolar protein 5A mm
MG-U74AV2:162433_F_AT nucleolar protein 5A mm
MOE430A:1426533_AT nucleolar protein 5A mm
MOUSE430A_2:1426533_AT nucleolar protein 5A mm
MOUSE430_2:1426533_AT nucleolar protein 5A mm
MU19KSUBC:TC36877_S_AT Nucleolar protein 5A (Nol5a), mRNA mm
RG-U34B:RC_AA924405_AT nucleolar protein 5A (predicted) rn
RAE230A:1388622_AT nucleolar protein 5A (predicted) rn
RAT230_2:1388622_AT nucleolar protein 5A (predicted) rn
RAE230B:1395998_AT nucleolar protein 5A (predicted) rn
RAT230_2:1395998_AT nucleolar protein 5A (predicted) rn
YEAST_2:1775762_AT Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects Sc
Protein Similarities
Method ID Description E-Value
blast CAA94897 Hypothetical protein K07C5.4 [Caenorhabditis elegans] ref|NP_505660.1| K07C5.4 [Caenorhabditis elegans] sp|Q21276|YZVL_CAEEL Hypothetical protein K07C5.4 in chromosome V 0.0
blast CAE64797 Hypothetical protein CBG09590 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002687 EMBL-EBI Pre-mRNA processing ribonucleoprotein, binding region 2.3E-95
Sequence
Target Sequence 
>C. ELEGANS:174915_S_AT
attgacgtcatgaaggaggccgaggaagctgccgttgaggttaaggagaagaagaagaag
gctgccaagaaagccaagcgtcttgctgaagagtctgtcactgcaactgctgaagctgag
gttgacgaggatgctccaaagccaaagaagaagaagaagagcaaggctggagacgagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGACGTCATGAAGGAGGCCGAGG 142 5 42 Antisense
AAGGAGGCCGAGGAAGCTGCCGTTG 200 159 54 Antisense
GGAAGCTGCCGTTGAGGTTAAGGAG 94 531 65 Antisense
AAGGCTGCCAAGAAAGCCAAGCGTC 355 161 99 Antisense
GCCAAGCGTCTTGCTGAAGAGTCTG 677 277 114 Antisense
TGAAGAGTCTGTCACTGCAACTGCT 342 575 128 Antisense
GTCTGTCACTGCAACTGCTGAAGCT 618 471 134 Antisense
ACTGCTGAAGCTGAGGTTGACGAGG 710 97 147 Antisense
GGTTGACGAGGATGCTCCAAAGCCA 382 507 161 Antisense
GACGAGGATGCTCCAAAGCCAAAGA 424 375 165 Antisense
AGAAGAGCAAGGCTGGAGACGAGTA 394 73 196 Antisense
Sequence Source Affymetrix Proprietary Database