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[174914_at]

Description CEK109G1R_rc /REP_DB=TREMBL Accession /GB=D72817 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk109g1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 47      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 91      6grp_total > 47      4grp_total > 43      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 172.9
(-0.2)
P 		247.7
(3)
P 		163.3
(-0.7)
P 		109.6
(-3)
P 		138
B 133
(-2.3)
P 		235.5
(3)
P 		118.4
(-3)
P 		132
(-2.3)
P 		117
C 106.8
(-3)
P 		257.3
(3)
P 		162.3
(-0.8)
P 		123.3
(-2.3)
P 		151
avr 137.6
(-2.2) 		246.8
(3) 		148
(-1.7) 		121.6
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 339
(2.7)
P 		240.4
(-0.1)
P 		139.5
(-3)
P 		148.3
(-2.7)
P 		161.4
(-2.4)
P 		348.7
(3)
P 		209
B 255.6
(2)
P 		279.3
(2.8)
P 		103.4
(-3)
P 		190.6
(-0.1)
P 		150.8
(-1.4)
P 		286.8
(3)
P 		183
C 215.2
(0.6)
P 		230
(1.3)
P 		164.5
(-1.7)
P 		145.3
(-2.6)
P 		136.2
(-3)
P 		266.7
(3)
P 		131
avr 269.9
(1.9) 		249.9
(1.2) 		135.8
(-3) 		161.4
(-2.1) 		149.5
(-2.5) 		300.7
(3) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 63
(3)
P 		53.8
(1.8)
P 		42.7
(0.4)
P 		16
(-3)
P 		47
B 42.4
(-0.1)
P 		58.2
(3)
P 		27.4
(-3)
P 		28.1
(-2.9)
P 		31
C 35.3
(-1.4)
P 		74
(3)
P 		56.6
(1)
P 		20.8
(-3)
P 		53
avr 46.9
(0.8) 		62
(3) 		42.2
(0.1) 		21.6
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 62.5
(0.5)
P 		85.5
(3)
P 		30.4
(-3)
P 		37.6
(-2.2)
P 		48.7
(-1)
P 		84.9
(2.9)
P 		55
B 89
(1.7)
P 		93
(2)
P 		25.1
(-3)
P 		50.5
(-1.1)
P 		61.3
(-0.3)
P 		106.9
(3)
P 		82
C 79.8
(2.1)
P 		70.2
(1.1)
P 		41.9
(-1.7)
P 		29.2
(-3)
P 		44.1
(-1.5)
P 		89.3
(3)
P 		60
avr 77.1
(1.4) 		82.9
(1.9) 		32.5
(-3) 		39.1
(-2.4) 		51.4
(-1.1) 		93.7
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174914_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22027
Sequence Type Exemplar sequence
Representative Public ID CEK109G1R NCBI
Target Description CEK109G1R_rc /REP_DB=TREMBL Accession /GB=D72817 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk109g1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F16B4.8 ENSEMBL cdna:known chromosome:CEL140:V:1577519:1585361:1 gene:F16B4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1584996-1585333(+) 100.0 100.0
Public Domain and Genome References
Ensembl F16B4.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94237 Cell division cycle related protein 25.2 [Caenorhabditis elegans] ref|NP_503446.1| Cell Division Cycle related family member (cdc-25.2) [Caenorhabditis elegans] sp|O44628|MPIP2_CAEEL M-phase inducer phosphatase cdc-25.2 (Cell division cycle related protein 25.2) 0.0
blast CAA77456 Hypothetical protein ZK637.11 [Caenorhabditis elegans] ref|NP_498972.1| ZK637.11 [Caenorhabditis elegans] sp|P30634|MPIP3_CAEEL M-phase inducer phosphatase cdc-25.3 (Cell division cycle related protein 25.3) 6.0E-45
blast CAE63674 Hypothetical protein CBG08176 [Caenorhabditis briggsae] 3.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001763 EMBL-EBI Rhodanese-like 1.6E-21
Sequence
Target Sequence 
>C. ELEGANS:174914_AT
ctctcttttctgtttccgaatattttctatgtctctctttatcaatctttgccacaccaa
aaattgtatttcttgaattatgggttccttcggtttctctgccactttgtcccgtgtgac
ttcccctcaatgtcccctgggtttaggatggatgggctagatcacacatatatgtatcta
taagtttctagatgttgacgtactttcccccctctctgtatccagtgctcagatcctgaa
gaacatagactgtaagaagactagatttattttcaactaattttgactatcgtcctattt
ttatatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCTTTTCTGTTTCCGAATATTT 142 231 13 Antisense
AATATTTTCTATGTCTCTCTTTATC 127 175 31 Antisense
TCTCTTTATCAATCTTTGCCACACC 309 611 46 Antisense
TTGCCACACCAAAAATTGTATTTCT 574 701 61 Antisense
TGAATTATGGGTTCCTTCGGTTTCT 38 573 86 Antisense
CCTCAATGTCCCCTGGGTTTAGGAT 499 255 137 Antisense
GGATGGATGGGCTAGATCACACATA 156 515 158 Antisense
TTCTAGATGTTGACGTACTTTCCCC 603 691 198 Antisense
CCTCTCTGTATCCAGTGCTCAGATC 519 267 223 Antisense
TGTATCCAGTGCTCAGATCCTGAAG 620 559 229 Antisense
TTGACTATCGTCCTATTTTTATATG 107 705 295 Antisense
Sequence Source Affymetrix Proprietary Database