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[174912_at]

Description CEK132B9R_rc /REP_DB=TREMBL Accession /GB=D65164 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk132b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 60      6grp_total > 36      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 413.9
(3)
P 		276.1
(-2.7)
P 		268.8
(-3)
P 		302.4
(-1.6)
P 		145
B 470.8
(3)
P 		320.8
(-3)
P 		359.1
(-1.5)
P 		375.5
(-0.8)
P 		150
C 434
(3)
P 		350.7
(0.3)
P 		371.5
(1)
P 		248.3
(-3)
P 		186
avr 439.6
(3) 		315.9
(-2.7) 		333.1
(-1.9) 		308.7
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 383.6
(1)
P 		441.1
(3)
P 		409.7
(1.9)
P 		270.2
(-3)
P 		402.1
(1.6)
P 		325.6
(-1.1)
P 		171
B 566.2
(3)
P 		506.4
(1.3)
P 		424.5
(-1)
P 		380.3
(-2.3)
P 		354.5
(-3)
P 		567.9
(3)
P 		213
C 456.5
(2)
P 		499.7
(3)
P 		314.7
(-1.4)
P 		314.8
(-1.4)
P 		249.9
(-3)
P 		472.6
(2.3)
P 		250
avr 468.8
(2.5) 		482.4
(3) 		383
(-0.7) 		321.8
(-3) 		335.5
(-2.5) 		455.4
(2) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 150.7
(3)
P 		59.9
(-2.1)
P 		70.3
(-1.5)
P 		44.3
(-3)
P 		106
B 150.1
(3)
P 		79.2
(-3)
P 		83.2
(-2.7)
P 		80
(-2.9)
P 		71
C 143.7
(3)
P 		100.8
(0.5)
P 		129.5
(2.2)
P 		41.9
(-3)
P 		102
avr 148.2
(3) 		80
(-1.4) 		94.3
(-0.5) 		55.4
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 70.7
(-2.9)
P 		156.9
(3)
P 		89.2
(-1.6)
P 		68.5
(-3)
P 		121.3
(0.6)
P 		79.3
(-2.3)
P 		88
B 197
(2.2)
P 		168.6
(0.7)
P 		103.1
(-2.9)
P 		100.7
(-3)
P 		144
(-0.7)
P 		211.8
(3)
P 		111
C 169.2
(3)
P 		152.5
(2.1)
P 		80.1
(-2)
P 		63.3
(-3)
P 		80.9
(-2)
P 		158.2
(2.4)
P 		106
avr 145.6
(2) 		159.3
(3) 		90.8
(-2) 		77.5
(-3) 		115.4
(-0.2) 		149.8
(2.3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22177
Sequence Type Exemplar sequence
Representative Public ID CEK132B9R NCBI
Target Description CEK132B9R_rc /REP_DB=TREMBL Accession /GB=D65164 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk132b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077549 NCBI Caenorhabditis elegans T04F8.6 (T04F8.6) mRNA, complete cds. 11/11 None
T04F8.6 ENSEMBL cdna:known chromosome:CEL140:X:11667080:11672222:1 gene:T04F8.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11671880-11672212(+) 96.39 100.0
Public Domain and Genome References
Gene Title
Ensembl T04F8.6
Entrez Gene 181354 Entrez gene
SwissProt Q22167 EMBL-EBI
WormBase CE37403 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91482 Hypothetical protein T04F8.6 [Caenorhabditis elegans] ref|NP_509950.2| T04F8.6 [Caenorhabditis elegans] 0.0
blast CAE70598 Hypothetical protein CBG17272 [Caenorhabditis briggsae] 1.0E-165
blast NP_997087 hypothetical protein LOC78177 [Mus musculus] gb|AAH67071.1| RIKEN cDNA 4930519N13 [Mus musculus] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:174912_AT
accatgtcgttttttattgctttcaattgtttccatttcattcacagtctctttcactta
atatcaaaaacctattgcatttagagtttacgcttttcaagatgtccatttttcagctat
tagtactattgatgcggttttatgaagggtagtaatgagctttgttgtaaaaaaacgcaa
cgtttttttttaaattctttgtttattatttttcaaattcctaattcccagttcatgtct
tgtttttctcgaagcaagaacgacaaaaatccgtgttcctgtaaatgtgtgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATGTCGTTTTTTATTGCTTTCA 81 87 13 Antisense
TTTATTGCTTTCAATTGTTTCCATT 61 675 25 Antisense
CATTTCATTCACAGTCTCTTTCACT 370 215 46 Antisense
CACAGTCTCTTTCACTTAATATCAA 440 195 55 Antisense
GCATTTAGAGTTTACGCTTTTCAAG 156 309 89 Antisense
GATGTCCATTTTTCAGCTATTAGTA 156 409 113 Antisense
TAGTACTATTGATGCGGTTTTATGA 707 653 133 Antisense
AGGGTAGTAATGAGCTTTGTTGTAA 231 57 158 Antisense
AATTCCTAATTCCCAGTTCATGTCT 79 177 228 Antisense
GTTCATGTCTTGTTTTTCTCGAAGC 352 445 243 Antisense
TCCGTGTTCCTGTAAATGTGTGTCC 274 595 282 Antisense
Sequence Source Affymetrix Proprietary Database