[Home] | [Total List]

[174911_at]

Description CEK016FXR_rc /REP_DB=TREMBL Accession /GB=D27651 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 50      4grp_high_8_8 > 41      6grp_highest_nonorm > 60      6grp_total > 07      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1334
1 2 3 4 range
A 1434.5
(3)
P 		552
(-1.3)
P 		411.5
(-2)
P 		212
(-3)
P 		1223
B 1393.5
(3)
P 		624.6
(-0.7)
P 		345.7
(-2.1)
P 		154.9
(-3)
P 		1239
C 1488.4
(3)
P 		531.5
(-1.7)
P 		397.6
(-2.4)
P 		278.3
(-3)
P 		1210
avr 1438.8
(3) 		569.4
(-1.3) 		384.9
(-2.2) 		215.1
(-3) 		1224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 816
1 2 3 4 5 6 range
A 931.5
(3)
P 		519
(-0.2)
P 		197.6
(-2.8)
P 		171.8
(-3)
P 		228.9
(-2.5)
P 		169.7
(-3)
P 		762
B 868.1
(3)
P 		389.3
(-1.1)
P 		249.4
(-2.3)
P 		211.2
(-2.7)
P 		171.3
(-3)
P 		202.6
(-2.7)
P 		697
C 697.4
(3)
P 		479.9
(0.8)
P 		249.1
(-1.6)
P 		169.7
(-2.4)
P 		152.2
(-2.6)
P 		115.7
(-3)
P 		582
avr 832.3
(3) 		462.7
(-0.3) 		232
(-2.4) 		184.2
(-2.8) 		184.1
(-2.8) 		162.7
(-3) 		670
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 522.3
(3)
P 		119.8
(-1.9)
P 		107.6
(-2.1)
P 		31
(-3)
P 		491
B 444.4
(3)
P 		154.3
(-1.2)
P 		80.1
(-2.3)
P 		33
(-3)
P 		411
C 492.7
(3)
P 		152.8
(-1.6)
P 		138.6
(-1.8)
P 		46.9
(-3)
P 		446
avr 486.5
(3) 		142.3
(-1.6) 		108.8
(-2) 		37
(-3) 		450

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 171.7
(2.5)
P 		184.6
(3)
P 		43
(-2.9)
P 		43.6
(-2.9)
P 		69.1
(-1.8)
P 		41.3
(-3)
P 		143
B 302.1
(3)
P 		129.6
(-1.2)
P 		60.6
(-2.9)
P 		55.9
(-3)
P 		69.6
(-2.7)
P 		75.5
(-2.5)
P 		246
C 258.5
(3)
P 		146.4
(0)
P 		63.4
(-2.2)
P 		34.1
(-3)
P 		49.3
(-2.6)
P 		38.7
(-2.9)
P 		224
avr 244.1
(3) 		153.5
(0.3) 		55.7
(-2.7) 		44.5
(-3) 		62.7
(-2.5) 		51.8
(-2.8) 		200
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21337
Sequence Type Exemplar sequence
Representative Public ID CEK016FXR NCBI
Target Description CEK016FXR_rc /REP_DB=TREMBL Accession /GB=D27651 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069872
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK617.1a.1 ENSEMBL cdna:known chromosome:CEL140:IV:11972693:12010977:-1 gene:ZK617.1 A 
NM_069872 NCBI Caenorhabditis elegans UNCoordinated family member (unc-22) (unc-22) mRNA, complete cds. None
ZK617.1a.2 ENSEMBL cdna:known chromosome:CEL140:IV:11972678:12010977:-1 gene:ZK617.1 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11972687-11973173(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK617.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98081 Hypothetical protein ZK617.1a [Caenorhabditis elegans] emb|CAA98064.2| Hypothetical protein ZK617.1a [Caenorhabditis elegans] ref|NP_502273.2| UNCoordinated family member (unc-22) [Caenorhabditis elegans] 0.0
blast CAA98082 Hypothetical protein ZK617.1b [Caenorhabditis elegans] emb|CAA98065.2| Hypothetical protein ZK617.1b [Caenorhabditis elegans] ref|NP_502274.2| UNCoordinated family member (unc-22) [Caenorhabditis elegans] 0.0
blast CAA33463 twitchin [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 6.0E-63
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 1.0E-154
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.0E-7
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.2E-13
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-16
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.2E-23
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.2E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.3E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.7E-19
Pfam IPR003961 EMBL-EBI Fibronectin, type III 5.8E-16
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.4E-13
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.9E-21
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-18
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-13
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.4E-13
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.4E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 3.4E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-18
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.8E-11
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.8E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 7.1E-18
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.7E-19
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.2E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.7E-21
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.1E-22
Pfam IPR003961 EMBL-EBI Fibronectin, type III 3.7E-19
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.3E-22
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.6E-12
Pfam IPR003961 EMBL-EBI Fibronectin, type III 5.9E-20
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.1E-15
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.8E-18
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.3E-19
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.6E-15
Pfam IPR000719 EMBL-EBI Protein kinase 4.9E-78
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.2E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0027
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.7E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.1E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.6E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0034
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0037
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.13
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0069
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0014
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.024
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.9E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0020
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.0E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.031
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.4E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.1E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.1E-4
Sequence
Target Sequence 
>C. ELEGANS:174911_AT
ttcaattgtttctcatttctccatgatttctcttttgtttccatctttttcagtcagatt
ttcagtttgggaccctgaatctctctgatccactttccatgattaggtatcaattcttaa
tatttgctgattatgcttgaattcgggacaaattcttcataaggttgcaatttttatgtc
tatttcttgagtatttttccaatagctttagtttggtagactccacatatcctggtgttt
tcttttctcacgattttttccattgtatgcgttctgaaatttgacttgaaaattttctgc
ttcttgtagatgctcaaaaaacttgaaattctactgaaactgctcatcttctctaaaaac
tgtaaatctttcatctagtcagtctgaggtgtttttatttctctctattttctctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAATTGTTTCTCATTTCTCCATG 516 685 48 Antisense
CTCCATGATTTCTCTTTTGTTTCCA 303 235 66 Antisense
CAGTTTGGGACCCTGAATCTCTCTG 592 203 110 Antisense
TCTCTGATCCACTTTCCATGATTAG 61 613 129 Antisense
GGTAGACTCCACATATCCTGGTGTT 183 505 262 Antisense
ATCCTGGTGTTTTCTTTTCTCACGA 447 39 276 Antisense
TCTCACGATTTTTTCCATTGTATGC 462 613 293 Antisense
ATTTTCTGCTTCTTGTAGATGCTCA 6 15 339 Antisense
TACTGAAACTGCTCATCTTCTCTAA 481 647 379 Antisense
GTAAATCTTTCATCTAGTCAGTCTG 613 461 409 Antisense
TTTATTTCTCTCTATTTTCTCTGGA 207 675 441 Antisense
Sequence Source Affymetrix Proprietary Database