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[174908_at]

Description CEK021GZR_rc /REP_DB=TREMBL Accession /GB=D32802 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk21g12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 56      6grp_total > 02      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1009
1 2 3 4 range
A 2160.9
(2.9)
P 		1445.8
(-3)
P 		1907
(0.8)
P 		2172.5
(3)
P 		727
B 2240.1
(3)
P 		1635.1
(-3)
P 		1766.9
(-1.7)
P 		2015.2
(0.8)
P 		605
C 1872.5
(3)
P 		1231.1
(-3)
P 		1756.6
(1.9)
P 		1672.5
(1.1)
P 		641
avr 2091.2
(3) 		1437.3
(-3) 		1810.2
(0.4) 		1953.4
(1.7) 		654

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 968
1 2 3 4 5 6 range
A 1970.5
(-0.7)
P 		2231.3
(1.4)
P 		1682.4
(-3)
P 		1691.5
(-2.9)
P 		2439.3
(3)
P 		1962.2
(-0.8)
P 		757
B 1989.4
(1)
P 		2177.4
(3)
P 		1908.4
(0.2)
P 		2048.5
(1.7)
P 		1810.9
(-0.8)
P 		1600.1
(-3)
P 		577
C 2306.2
(3)
P 		2106.9
(1.6)
P 		1803.9
(-0.6)
P 		1524.5
(-2.6)
P 		2206.8
(2.3)
P 		1471.4
(-3)
P 		835
avr 2088.7
(2) 		2171.9
(3) 		1798.2
(-1.5) 		1754.8
(-2.1) 		2152.3
(2.8) 		1677.9
(-3) 		494
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 505
1 2 3 4 range
A 786.8
(3)
P 		313.8
(-3)
P 		498.5
(-0.7)
P 		318
(-2.9)
P 		473
B 714.4
(3)
P 		403.8
(-3)
P 		409.4
(-2.9)
P 		429.4
(-2.5)
P 		311
C 619.9
(3)
P 		353.9
(-1.7)
P 		612.2
(2.9)
P 		282
(-3)
P 		338
avr 707
(3) 		357.2
(-2.8) 		506.7
(-0.3) 		343.1
(-3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 548
1 2 3 4 5 6 range
A 363.2
(-3)
P 		793.5
(3)
P 		366.4
(-3)
P 		429
(-2.1)
P 		736.1
(2.2)
P 		477.7
(-1.4)
P 		430
B 692.2
(2)
P 		724.8
(2.8)
P 		463.4
(-3)
P 		542.6
(-1.3)
P 		735.7
(3)
P 		596.7
(-0.1)
P 		272
C 854.8
(3)
P 		642.9
(0.7)
P 		459.1
(-1.3)
P 		306.6
(-3)
P 		714.1
(1.5)
P 		492.6
(-1)
P 		548
avr 636.7
(1.2) 		720.4
(2.8) 		429.6
(-2.9) 		426.1
(-3) 		728.6
(3) 		522.3
(-1.1) 		303
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21544
Sequence Type Exemplar sequence
Representative Public ID CEK021GZR NCBI
Target Description CEK021GZR_rc /REP_DB=TREMBL Accession /GB=D32802 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk21g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK021GZR
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK021GZR CEK021GZR_rc /REP_DB=TREMBL Accession /GB=D32802 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk21g12 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4415351-4415587(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174908_AT
ccctgatcatgtagagccctttagatggactgtgcctttttgactagcgatttttcaatt
ctaaattcaattcatattttccacaatccccattttctctctctattgcgcggttgttgc
ccccattaagccgggaaccagacacttttgtggcatagttttttttgtagatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTGATCATGTAGAGCCCTTTAGA 211 259 18 Antisense
GAGCCCTTTAGATGGACTGTGCCTT 141 385 31 Antisense
GACTGTGCCTTTTTGACTAGCGATT 682 375 45 Antisense
GTGCCTTTTTGACTAGCGATTTTTC 490 477 49 Antisense
TTTGACTAGCGATTTTTCAATTCTA 5 669 56 Antisense
TCAATTCATATTTTCCACAATCCCC 541 633 84 Antisense
CCATTAAGCCGGGAACCAGACACTT 259 269 140 Antisense
GCCGGGAACCAGACACTTTTGTGGC 557 281 147 Antisense
GAACCAGACACTTTTGTGGCATAGT 590 343 152 Antisense
GACACTTTTGTGGCATAGTTTTTTT 275 365 158 Antisense
TGTGGCATAGTTTTTTTTGTAGATT 456 555 166 Antisense
Sequence Source Affymetrix Proprietary Database