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[174907_at] Yeast hypothetical YIK9 protein like

Description CEK038GYR_rc /REP_DB=TREMBL Accession /GB=D33955 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk38g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 30      6grp_total > 05      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 12      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 613
1 2 3 4 range
A 912.2
(2.1)
P 		468.4
(-3)
P 		994.9
(3)
P 		567.5
(-1.9)
P 		527
B 789
(1.6)
P 		847.5
(2.3)
P 		900.5
(3)
P 		431.8
(-3)
P 		469
C 799.1
(-0.8)
P 		1044.4
(3)
P 		843.6
(-0.1)
P 		655
(-3)
P 		389
avr 833.4
(1.7) 		786.8
(0.9) 		913
(3) 		551.4
(-3) 		362

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 748
1 2 3 4 5 6 range
A 1127.8
(3)
P 		831.9
(0.1)
P 		757.6
(-0.6)
P 		578.3
(-2.3)
P 		871.4
(0.5)
P 		509.5
(-3)
P 		618
B 1244.4
(3)
P 		952.1
(0.2)
P 		623.3
(-3)
P 		889.3
(-0.4)
P 		743.2
(-1.8)
P 		710
(-2.2)
P 		621
C 1057.8
(3)
P 		822
(0.5)
P 		655.9
(-1.3)
P 		549.9
(-2.4)
P 		682.8
(-1)
P 		496.5
(-3)
P 		561
avr 1143.3
(3) 		868.7
(0.1) 		678.9
(-1.9) 		672.5
(-1.9) 		765.8
(-1) 		572
(-3) 		571
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 332.1
(3)
P 		101.7
(-2.6)
P 		260.1
(1.3)
P 		83.1
(-3)
P 		249
B 251.6
(3)
P 		209.3
(1.4)
P 		208.7
(1.4)
P 		92
(-3)
P 		160
C 264.5
(1.9)
P 		300.3
(3)
P 		294
(2.8)
P 		110.4
(-3)
P 		190
avr 282.7
(3) 		203.8
(0.5) 		254.3
(2.1) 		95.2
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 207.9
(-0.1)
P 		295.9
(3)
P 		165
(-1.6)
P 		146.7
(-2.2)
P 		263
(1.9)
P 		124.1
(-3)
P 		172
B 433
(3)
P 		316.9
(0.5)
P 		151.4
(-3)
P 		235.6
(-1.2)
P 		301.9
(0.2)
P 		264.8
(-0.6)
P 		282
C 392.1
(3)
P 		250.8
(-0)
P 		166.9
(-1.8)
P 		110.6
(-3)
P 		220.9
(-0.6)
P 		166.2
(-1.8)
P 		282
avr 344.3
(3) 		287.9
(1.2) 		161.1
(-3) 		164.3
(-2.9) 		261.9
(0.3) 		185
(-2.2) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21469
Sequence Type Exemplar sequence
Representative Public ID CEK038GYR NCBI
Target Description CEK038GYR_rc /REP_DB=TREMBL Accession /GB=D33955 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk38g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069777 NCBI Caenorhabditis elegans yeast SEC homolog family member (sec-24.1) (sec-24.1) mRNA, complete cds. 11/11 None
F12F6.6 ENSEMBL cdna:known chromosome:CEL140:IV:11561949:11566161:-1 gene:F12F6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11561982-11562387(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical YIK9 protein like
Gene Symbol sec-24.1
Ensembl F12F6.6
Entrez Gene 178078 Entrez gene
SwissProt Q19371 EMBL-EBI
WormBase CE05594 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252662_AT sec23/sec24 transport family protein at
CANINE_2:CFA.21369.1.S1_S_AT similar to SEC24-related protein C cfa
CANINE_2:CFAAFFX.22893.1.S1_S_AT similar to SEC24-related protein C cfa
DROSOPHILA_2:1628938_AT dm
DROSGENOME1:141363_AT dm
CHICKEN:GGA.8934.1.S1_AT similar to SEC24-related protein C; protein transport protein SEC24C; SEC24 (S. cerevisiae) related gene family, member C gga
CHICKEN:GGAAFFX.3246.1.S1_S_AT similar to SEC24-related protein C; protein transport protein SEC24C; SEC24 (S. cerevisiae) related gene family, member C gga
HU35KSUBC:RC_AA088509_S_AT SEC24 related gene family, member C (S. cerevisiae) hs
HUGENEFL:D38555_AT SEC24 related gene family, member C (S. cerevisiae) hs
HG-U133A:202361_AT SEC24 related gene family, member C (S. cerevisiae) hs
HG-U133_PLUS_2:202361_AT SEC24 related gene family, member C (S. cerevisiae) hs
HG-FOCUS:202361_AT SEC24 related gene family, member C (S. cerevisiae) hs
HG-U133A_2:202361_AT SEC24 related gene family, member C (S. cerevisiae) hs
U133_X3P:G4758633_3P_X_AT SEC24 related gene family, member C (S. cerevisiae) hs
U133_X3P:G4758633_3P_AT SEC24 related gene family, member C (S. cerevisiae) hs
HG-U95AV2:38117_AT SEC24 related gene family, member C (S. cerevisiae) hs
MOUSE430_2:1430250_AT SEC24 related gene family, member C (S. cerevisiae) mm
MOE430B:1430250_AT SEC24 related gene family, member C (S. cerevisiae) mm
MU11KSUBA:AA175517_S_AT SEC24 related gene family, member C (S. cerevisiae) mm
MG-U74AV2:99617_AT SEC24 related gene family, member C (S. cerevisiae) mm
MOE430A:1452147_AT SEC24 related gene family, member C (S. cerevisiae) mm
MOUSE430A_2:1452147_AT SEC24 related gene family, member C (S. cerevisiae) mm
MOUSE430_2:1452147_AT SEC24 related gene family, member C (S. cerevisiae) mm
MU19KSUBC:TC39541_AT SEC24 related gene family, member C (S. cerevisiae), mRNA (cDNA clone IMAGE:4950601) mm
YEAST_2:1777387_AT Member of the Sec24p family; forms a complex, with Sec23p, that is involved in sorting of Pma1p into COPII vesicles; peripheral ER membrane protein; potential Cdc28p substrate Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30127 COPII vesicle coat inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97788 Hypothetical protein F12F6.6 [Caenorhabditis elegans] ref|NP_502178.1| yeast SEC homolog family member (sec-24.1) [Caenorhabditis elegans] 0.0
blast CAE62099 Hypothetical protein CBG06129 [Caenorhabditis briggsae] 0.0
blast XP_392952 PREDICTED: similar to ENSANGP00000012422 [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006895 EMBL-EBI Sec23/Sec24 zinc finger 1.8E-20
Pfam IPR007123 EMBL-EBI Gelsolin region 6.3E-18
Pfam IPR006900 EMBL-EBI Sec23/Sec24 helical domain 2.3E-38
Pfam IPR006896 EMBL-EBI Sec23/Sec24 trunk domain 1.4E-111
Sequence
Target Sequence 
>C. ELEGANS:174907_AT
gttcttccttcatattattttgatcacgccaaagcaaatcttgtgattagaaatgttgga
agaattaatattttgtaccggtttctttgtacacattcatttccttccctctcgccgtac
tattttcttttaatattatggagcatggtttgtaaaaattaagatattagctttcctagc
accttatcagtgcaaaaatagaatttgttttatctgctttttcccagattcctaatttat
tcttttccagttgctctcgcgacttttagagatttctatttattgttcctttttttgtaa
aatatcccctattaccccgtccatataatttattgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCCTTCATATTATTTTGATC 163 445 38 Antisense
CCTTCATATTATTTTGATCACGCCA 529 269 44 Antisense
TGATCACGCCAAAGCAAATCTTGTG 409 555 58 Antisense
TACCGGTTTCTTTGTACACATTCAT 150 651 113 Antisense
GTTTCTTTGTACACATTCATTTCCT 485 449 118 Antisense
TCTCGCCGTACTATTTTCTTTTAAT 285 609 147 Antisense
ATTTGTTTTATCTGCTTTTTCCCAG 583 17 240 Antisense
GTTGCTCTCGCGACTTTTAGAGATT 505 439 287 Antisense
TAGAGATTTCTATTTATTGTTCCTT 489 653 304 Antisense
CTATTACCCCGTCCATATAATTTAT 673 221 346 Antisense
TACCCCGTCCATATAATTTATTGTG 337 647 350 Antisense
Sequence Source Affymetrix Proprietary Database