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[174906_s_at]

Description CEK128B7R_rc /REP_DB=TREMBL Accession /GB=D64941 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk128b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 02      6grp_total > 17      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2377
1 2 3 4 range
A 3030.4
(3)
P 		1231.5
(-2)
P 		1801.5
(-0.4)
P 		877.3
(-3)
P 		2153
B 3254.4
(3)
P 		2000
(-0.5)
P 		1779.8
(-1.2)
P 		1131.9
(-3)
P 		2123
C 2774.9
(3)
P 		2191.5
(0.6)
P 		1759.3
(-1.2)
P 		1316
(-3)
P 		1459
avr 3019.9
(3) 		1807.7
(-0.8) 		1780.2
(-0.9) 		1108.4
(-3) 		1912

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2718
1 2 3 4 5 6 range
A 3847.7
(3)
P 		2467.7
(-0.3)
P 		1896
(-1.7)
P 		1338.3
(-3)
P 		1835.3
(-1.8)
P 		1577.4
(-2.4)
P 		2509
B 3773.7
(3)
P 		2519.9
(-0.2)
P 		1432.5
(-3)
P 		1936.6
(-1.7)
P 		1423.1
(-3)
P 		1628.9
(-2.5)
P 		2351
C 3483.9
(3)
P 		2663.9
(0.9)
P 		1748
(-1.4)
P 		1130
(-3)
P 		1292.1
(-2.6)
P 		1744.7
(-1.4)
P 		2354
avr 3701.8
(3) 		2550.5
(-0.1) 		1692.2
(-2.4) 		1468.3
(-3) 		1516.8
(-2.9) 		1650.3
(-2.5) 		2234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 975
1 2 3 4 range
A 1103.4
(3)
P 		267.3
(-2.1)
P 		471
(-0.9)
P 		128.4
(-3)
P 		975
B 1037.8
(3)
P 		493.9
(-1.1)
P 		412.4
(-1.7)
P 		241.2
(-3)
P 		797
C 918.6
(3)
P 		630.1
(0.5)
P 		613.2
(0.4)
P 		221.9
(-3)
P 		697
avr 1019.9
(3) 		463.8
(-1.1) 		498.9
(-0.8) 		197.2
(-3) 		823

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1086
1 2 3 4 5 6 range
A 709.3
(1.1)
P 		877.6
(3)
P 		412.9
(-2.2)
P 		339.4
(-3)
P 		553.8
(-0.6)
P 		384
(-2.5)
P 		538
B 1313
(3)
P 		838.8
(0.1)
P 		347.8
(-3)
P 		512.9
(-2)
P 		578.2
(-1.6)
P 		607.4
(-1.4)
P 		965
C 1291.3
(3)
P 		812.8
(0.3)
P 		444.9
(-1.8)
P 		227.2
(-3)
P 		418.1
(-1.9)
P 		584
(-1)
P 		1064
avr 1104.5
(3) 		843.1
(0.9) 		401.9
(-2.7) 		359.8
(-3) 		516.7
(-1.7) 		525.1
(-1.7) 		745
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174906_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22212
Sequence Type Exemplar sequence
Representative Public ID CEK128B7R NCBI
Target Description CEK128B7R_rc /REP_DB=TREMBL Accession /GB=D64941 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk128b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029260 NCBI Caenorhabditis elegans Drosophila Discs Large homolog family member (dlg-1) (dlg-1) mRNA, complete cds. 11/11 None
C25F6.2a ENSEMBL cdna:known chromosome:CEL140:X:5479662:5484902:1 gene:C25F6.2 11/11 A 
C25F6.2b.1 ENSEMBL cdna:known chromosome:CEL140:X:5480368:5484902:1 gene:C25F6.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180819 2 1 NM_001029260 174906_s_at (11), 191562_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5484546-5484892(+) 87.57 100.0
Public Domain and Genome References
Ensembl C25F6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39197 Drosophila discs large homolog protein 1, isoform a [Caenorhabditis elegans] emb|CAC35153.1| MAGUK protein DLG-1 [Caenorhabditis elegans] ref|NP_001024431.1| Drosophila Discs Large homolog family member (dlg-1) [Caenorhabditis elegans] gb|AAL01376.1| SAP97-like protein DLG-1 [Caenorhabditis elegans] 0.0
blast T15617 hypothetical protein C25F6.2 - Caenorhabditis elegans 0.0
blast CAE68757 Hypothetical protein CBG14691 [Caenorhabditis briggsae] 0.0
blast AAP68951 Drosophila discs large homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024432.1| Drosophila Discs Large homolog family member (dlg-1) [Caenorhabditis elegans] 1.0E-171
blast AAK39197 Drosophila discs large homolog protein 1, isoform a [Caenorhabditis elegans] emb|CAC35153.1| MAGUK protein DLG-1 [Caenorhabditis elegans] ref|NP_001024431.1| Drosophila Discs Large homolog family member (dlg-1) [Caenorhabditis elegans] gb|AAL01376.1| SAP97-like protein DLG-1 [Caenorhabditis elegans] 1.0E-168
blast T15617 hypothetical protein C25F6.2 - Caenorhabditis elegans 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 7.1E-22
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 8.8E-21
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 7.4E-23
Pfam IPR001452 EMBL-EBI SH3 1.6E-7
Pfam IPR008144 EMBL-EBI Guanylate kinase 1.1E-41
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 7.1E-22
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 5.4E-15
Sequence
Target Sequence 
>C. ELEGANS:174906_S_AT
cccaactcaattcacttcttacttgaaattgtgacagtttgtgatattctcaacgcttca
tttgtctctactaaccgcaaatcattatcatattcccgactctctactgatgaaaaactt
cggctcatttctattttttgggacttttattactctgagagcattttattttcatccatt
ggttccaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAACTCAATTCACTTCTTACTTG 365 257 112 Antisense
CACTTCTTACTTGAAATTGTGACAG 62 197 124 Antisense
ACAGTTTGTGATATTCTCAACGCTT 490 107 145 Antisense
TTCTCAACGCTTCATTTGTCTCTAC 307 691 158 Antisense
CAACGCTTCATTTGTCTCTACTAAC 512 185 162 Antisense
CATTTGTCTCTACTAACCGCAAATC 202 215 170 Antisense
AATCATTATCATATTCCCGACTCTC 325 171 191 Antisense
TATTCCCGACTCTCTACTGATGAAA 669 663 202 Antisense
GAAAAACTTCGGCTCATTTCTATTT 290 355 223 Antisense
GGGACTTTTATTACTCTGAGAGCAT 689 493 251 Antisense
TATTTTCATCCATTGGTTCCAAACT 438 663 278 Antisense
Sequence Source Affymetrix Proprietary Database