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[174905_at]

Description CEK014HXR_rc /REP_DB=TREMBL Accession /GB=D27594 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14h10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 25      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 73      6grp_total > 26      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > 01_02      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 616
1 2 3 4 range
A 872.9
(3)
P 		401.8
(-2.2)
P 		443.6
(-1.8)
P 		331.1
(-3)
P 		542
B 638.9
(3)
P 		562.6
(0.7)
P 		440.3
(-3)
P 		458.1
(-2.5)
P 		199
C 721.3
(3)
P 		632.4
(1.9)
P 		553.1
(0.8)
P 		257.4
(-3)
P 		464
avr 744.4
(3) 		532.3
(-0.2) 		479
(-1) 		348.9
(-3) 		396

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 595.2
(1)
P 		675.7
(3)
P 		652.7
(2.4)
P 		490.2
(-1.6)
P 		434
(-3)
P 		511.2
(-1.1)
P 		242
B 565.7
(1.6)
P 		640.5
(3)
P 		322.5
(-3)
P 		618.3
(2.6)
P 		474.9
(-0.1)
P 		552.7
(1.3)
P 		318
C 647.6
(3)
P 		440.8
(-2.9)
P 		466.7
(-2.2)
P 		523.1
(-0.6)
P 		496.5
(-1.3)
P 		439
(-3)
P 		209
avr 602.8
(3) 		585.7
(2.2) 		480.6
(-2.5) 		543.9
(0.4) 		468.5
(-3) 		501
(-1.5) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 317.8
(3)
P 		87.2
(-2.1)
P 		116
(-1.5)
P 		48.5
(-3)
P 		269
B 203.7
(3)
P 		139
(-0.7)
P 		102
(-2.8)
P 		97.6
(-3)
P 		106
C 238.8
(3)
P 		181.8
(1.2)
P 		192.8
(1.6)
P 		43.4
(-3)
P 		195
avr 253.4
(3) 		136
(-0.7) 		136.9
(-0.7) 		63.2
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 109.7
(-3)
P 		240.3
(3)
P 		142.2
(-1.5)
P 		124.3
(-2.3)
P 		131
(-2)
P 		124.5
(-2.3)
P 		131
B 196.9
(2.3)
P 		213.2
(3)
P 		78.3
(-3)
P 		163.8
(0.8)
P 		192.9
(2.1)
P 		206.1
(2.7)
P 		135
C 240
(3)
P 		134.5
(-1.7)
P 		118.8
(-2.4)
P 		105.2
(-3)
P 		160.7
(-0.5)
P 		147
(-1.1)
P 		135
avr 182.2
(2) 		196
(3) 		113.1
(-3) 		131.1
(-1.7) 		161.5
(0.5) 		159.2
(0.3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174905_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21934
Sequence Type Exemplar sequence
Representative Public ID CEK014HXR NCBI
Target Description CEK014HXR_rc /REP_DB=TREMBL Accession /GB=D27594 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14h10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074075 NCBI Caenorhabditis elegans F58E10.1 (F58E10.1) mRNA, complete cds. 11/11 None
F58E10.1 ENSEMBL cdna:known chromosome:CEL140:V:13989761:14004985:-1 gene:F58E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13989790-13990123(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E10.1
Entrez Gene 179894 Entrez gene
SwissProt Q9XUW6 EMBL-EBI
WormBase CE30677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04517 Hypothetical protein F58E10.1 [Caenorhabditis elegans] ref|NP_506476.2| F58E10.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174905_AT
caaccccatcccagtgtaggaggctcttttcaactcgaggagctctaagaaatatcgagt
tttgttcaatttttctcccaaactttccaaatttttcatgttcccggtgccaattcaccc
ccactttccgtaggttttccctccattctcgctggttcaaaagtttctgtattttttgta
gaattttaggtctcgtagcgctttttttctgaattcataggcaattcatgttatcattat
tttttctcacattttatgactgctttcttgacaatttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCCCATCCCAGTGTAGGAGGCT 269 187 37 Antisense
GGAGGCTCTTTTCAACTCGAGGAGC 481 513 55 Antisense
TCCAAATTTTTCATGTTCCCGGTGC 69 589 122 Antisense
CCTCCATTCTCGCTGGTTCAAAAGT 616 265 176 Antisense
CTCGCTGGTTCAAAAGTTTCTGTAT 397 233 184 Antisense
GAATTTTAGGTCTCGTAGCGCTTTT 480 321 217 Antisense
CGTAGCGCTTTTTTTCTGAATTCAT 538 245 230 Antisense
ATTCATAGGCAATTCATGTTATCAT 208 11 249 Antisense
TTCATGTTATCATTATTTTTTCTCA 139 689 261 Antisense
TTTTTCTCACATTTTATGACTGCTT 443 675 277 Antisense
TATGACTGCTTTCTTGACAATTTGT 380 657 291 Antisense
Sequence Source Affymetrix Proprietary Database