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[174904_at]

Description CEK044FYR_rc /REP_DB=TREMBL Accession /GB=D34338 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44f11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 48      6grp_total > 69      4grp_total > 35      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1108
1 2 3 4 range
A 3401.6
(-1.1)
P 		3826.6
(3)
P 		3744.3
(2.2)
P 		3210.4
(-3)
P 		616
B 4279.8
(3)
P 		4264.5
(2.9)
P 		3227.1
(-3)
P 		4086.4
(1.9)
P 		1053
C 3291.1
(-3)
P 		4318.6
(3)
P 		3391.9
(-2.4)
P 		4030.9
(1.3)
P 		1028
avr 3657.5
(-1.2) 		4136.6
(3) 		3454.4
(-3) 		3775.9
(-0.2) 		682

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2642
1 2 3 4 5 6 range
A 4988.1
(3)
P 		3695.7
(-0.3)
P 		2614.2
(-3)
P 		3872.1
(0.2)
P 		4768.4
(2.4)
P 		4380.1
(1.5)
P 		2374
B 3114.1
(-1.1)
P 		2952.7
(-1.5)
P 		2346.2
(-3)
P 		3380.9
(-0.5)
P 		3955.5
(1)
P 		4789.8
(3)
P 		2444
C 3394.8
(-2.8)
P 		3395.3
(-2.8)
P 		4252.7
(3)
P 		4146.4
(2.3)
P 		3368.9
(-3)
P 		4176.5
(2.5)
P 		884
avr 3832.3
(0.3) 		3347.9
(-1.8) 		3071
(-3) 		3799.8
(0.2) 		4030.9
(1.2) 		4448.8
(3) 		1378
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 895
1 2 3 4 range
A 1238.5
(3)
P 		830.6
(-0.2)
P 		978.8
(1)
P 		469.9
(-3)
P 		769
B 1364.8
(3)
P 		1053.2
(-0)
P 		747.8
(-3)
P 		870.8
(-1.8)
P 		617
C 1089.5
(1.4)
P 		1241.6
(3)
P 		1182.2
(2.4)
P 		679.7
(-3)
P 		562
avr 1230.9
(3) 		1041.8
(1) 		969.6
(0.2) 		673.5
(-3) 		557

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1217
1 2 3 4 5 6 range
A 919.5
(-0.6)
P 		1314.4
(2.1)
P 		569.3
(-3)
P 		982.1
(-0.2)
P 		1438.9
(3)
P 		1066.4
(0.4)
P 		870
B 1083.6
(-0.5)
P 		982.8
(-1)
P 		569.7
(-3)
P 		895.5
(-1.4)
P 		1607.1
(2.1)
P 		1786.1
(3)
P 		1216
C 1258.3
(1.5)
P 		1036
(-0.9)
P 		1082.4
(-0.4)
P 		833.8
(-3)
P 		1090.1
(-0.3)
P 		1398.1
(3)
P 		564
avr 1087.1
(0.1) 		1111.1
(0.3) 		740.5
(-3) 		903.8
(-1.6) 		1378.7
(2.7) 		1416.9
(3) 		676
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21710
Sequence Type Exemplar sequence
Representative Public ID CEK044FYR NCBI
Target Description CEK044FYR_rc /REP_DB=TREMBL Accession /GB=D34338 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072774 NCBI Caenorhabditis elegans F52E1.13b (F52E1.13) mRNA, complete cds. 11/11 None
F52E1.13b.2 ENSEMBL cdna:known chromosome:CEL140:V:8418279:8425326:-1 gene:F52E1.13 11/11 A 
F52E1.13b.1 ENSEMBL cdna:known chromosome:CEL140:V:8418279:8431207:-1 gene:F52E1.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179225 4 1 NM_072772 187118_s_at (11)
NM_072773 187118_s_at (11)
NM_072774 174904_at (11), 187118_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8418298-8418675(-) 100.0 100.0
Public Domain and Genome References
Ensembl F52E1.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO12424 Hypothetical protein F52E1.13b [Caenorhabditis elegans] ref|NP_505175.2| F52E1.13b [Caenorhabditis elegans] 0.0
blast AAO12423 Hypothetical protein F52E1.13a [Caenorhabditis elegans] ref|NP_505173.2| F52E1.13a [Caenorhabditis elegans] 1.0E-127
blast AAZ91354 Hypothetical protein F52E1.13c [Caenorhabditis elegans] 1.0E-127
Sequence
Target Sequence 
>C. ELEGANS:174904_AT
cccatccatgctccatcaaattgtaaaacgcatttgtttccttcccccgacacaaagaac
taattcttgttgcccctccacaccgattttatgtgtatattcattccccgtatatttatt
cctttaaacacacacacaccctcatgataatttgtgttaggcatagtcttctcatatttc
ccccaccccgatttgacacatgctcccgcagtgatatttttgtcccccaattttcaattg
tttcatttgagtctactggtattgtgaaactagttgattttcctcacacacaacacaaac
acgtcagtcagttacagtactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCATCCATGCTCCATCAAATTGTA 399 259 37 Antisense
TCCCCCGACACAAAGAACTAATTCT 525 595 79 Antisense
CCCCTCCACACCGATTTTATGTGTA 307 261 109 Antisense
TTATGTGTATATTCATTCCCCGTAT 658 679 125 Antisense
TCATTCCCCGTATATTTATTCCTTT 679 617 137 Antisense
TATTCCTTTAAACACACACACACCC 517 663 153 Antisense
TAGGCATAGTCTTCTCATATTTCCC 222 655 194 Antisense
TGACACATGCTCCCGCAGTGATATT 350 571 230 Antisense
TGATATTTTTGTCCCCCAATTTTCA 397 563 248 Antisense
TGATTTTCCTCACACACAACACAAA 382 563 311 Antisense
AACACGTCAGTCAGTTACAGTACTC 593 135 334 Antisense
Sequence Source Affymetrix Proprietary Database