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[174902_at]

Description CEK107A2R_rc /REP_DB=TREMBL Accession /GB=D72690 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk107a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 26      4grp_highest_8_8 > 47      4grp_high_8_8 > 03      6grp_highest_nonorm > 30      6grp_total > 26      4grp_total > 13      6grp_highest_sub > 01_02      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1455
1 2 3 4 range
A 1287.7
(0.7)
P 		537.4
(-2.9)
P 		514.1
(-3)
P 		1782.4
(3)
P 		1268
B 1326.6
(0.6)
P 		531.8
(-2.6)
P 		444.2
(-3)
P 		1899.3
(3)
P 		1455
C 1087.6
(-0)
P 		613.6
(-2.3)
P 		461.9
(-3)
P 		1717.3
(3)
P 		1255
avr 1234
(0.4) 		560.9
(-2.6) 		473.4
(-3) 		1799.7
(3) 		1326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 696
1 2 3 4 5 6 range
A 881.2
(0.1)
P 		1182.6
(3)
P 		559.5
(-3)
P 		727.6
(-1.4)
P 		610.4
(-2.5)
P 		892.5
(0.2)
P 		623
B 823.2
(1.7)
P 		919
(3)
P 		486.4
(-3)
P 		636.8
(-0.9)
P 		557.9
(-2)
P 		761
(0.8)
P 		433
C 1166
(3)
P 		807.6
(-0.3)
P 		683.4
(-1.5)
P 		520.8
(-3)
P 		606.2
(-2.2)
P 		607.7
(-2.2)
P 		645
avr 956.8
(2.8) 		969.7
(3) 		576.4
(-3) 		628.4
(-2.2) 		591.5
(-2.8) 		753.7
(-0.3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 468.9
(3)
P 		116.7
(-3)
P 		134.4
(-2.7)
P 		260.9
(-0.5)
P 		352
B 423.1
(3)
P 		131.3
(-2.5)
P 		102.9
(-3)
P 		404.7
(2.7)
P 		320
C 360
(3)
P 		176.4
(-2.5)
P 		161
(-3)
P 		289.6
(0.9)
P 		199
avr 417.3
(3) 		141.5
(-2.8) 		132.8
(-3) 		318.4
(0.9) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 162.4
(-2.2)
P 		420.6
(3)
P 		121.8
(-3)
P 		184.5
(-1.7)
P 		184.2
(-1.7)
P 		217.3
(-1.1)
P 		299
B 286.4
(2.4)
P 		305.9
(3)
P 		118.1
(-3)
P 		168.7
(-1.4)
P 		226.7
(0.5)
P 		283.8
(2.3)
P 		188
C 432.2
(3)
P 		246.4
(-0.4)
P 		173.9
(-1.7)
P 		104.7
(-3)
P 		196.2
(-1.3)
P 		203.4
(-1.2)
P 		328
avr 293.7
(2) 		324.3
(3) 		137.9
(-3) 		152.6
(-2.5) 		202.4
(-0.9) 		234.8
(0.1) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21834
Sequence Type Exemplar sequence
Representative Public ID CEK107A2R NCBI
Target Description CEK107A2R_rc /REP_DB=TREMBL Accession /GB=D72690 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk107a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073445 NCBI Caenorhabditis elegans K10D6.4 (K10D6.4) mRNA, complete cds. 11/11 None
K10D6.4.1 ENSEMBL cdna:known chromosome:CEL140:V:11213923:11219362:1 gene:K10D6.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11219021-11219334(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D6.4
Entrez Gene 179549 Entrez gene
SwissProt Q21423 EMBL-EBI
WormBase CE36185 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98512 Hypothetical protein K10D6.4 [Caenorhabditis elegans] ref|NP_505846.2| K10D6.4 [Caenorhabditis elegans] 1.0E-158
blast CAE75190 Hypothetical protein CBG23136 [Caenorhabditis briggsae] 1.0E-115
Sequence
Target Sequence 
>C. ELEGANS:174902_AT
tccgcccaatatattctagtccgtgtcttaccccttgacaaaaatgagcttttctcagat
tccgactaattccaaaaaaattccctacgttttgaataattgtcgctttgtatttttttt
tctcgttttcatacgggtgttcatcattcattttacttttttaaaaattttcctctcgtt
tcttttgaacgtcccatttttattgcaatcgttcattgtctagggtctatccttctaatc
attct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCCCAATATATTCTAGTCCGTG 255 597 35 Antisense
ATATATTCTAGTCCGTGTCTTACCC 521 19 43 Antisense
GTCTTACCCCTTGACAAAAATGAGC 680 443 59 Antisense
TGAGCTTTTCTCAGATTCCGACTAA 287 569 79 Antisense
CCCTACGTTTTGAATAATTGTCGCT 657 257 117 Antisense
TCTCGTTTTCATACGGGTGTTCATC 581 611 155 Antisense
GGGTGTTCATCATTCATTTTACTTT 57 499 169 Antisense
CTCTCGTTTCTTTTGAACGTCCCAT 234 223 207 Antisense
GAACGTCCCATTTTTATTGCAATCG 130 349 221 Antisense
ATCGTTCATTGTCTAGGGTCTATCC 471 35 242 Antisense
TAGGGTCTATCCTTCTAATCATTCT 583 653 255 Antisense
Sequence Source Affymetrix Proprietary Database