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[174901_at]

Description CEK065FXR_rc /REP_DB=TREMBL Accession /GB=D65656 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk65f10 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 29      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_total > 16      4grp_total > 31      6grp_cgc > 03      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 787
1 2 3 4 range
A 667.4
(3)
P 		277.8
(-3)
P 		397.2
(-1.2)
P 		280.1
(-3)
P 		390
B 1005.4
(3)
P 		308.5
(-2.3)
P 		218.6
(-3)
P 		565.8
(-0.4)
P 		787
C 549.6
(0.6)
P 		323.6
(-3)
P 		425.3
(-1.4)
P 		700.9
(3)
P 		377
avr 740.8
(3) 		303.3
(-3) 		347
(-2.4) 		515.6
(-0.1) 		438

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 912
1 2 3 4 5 6 range
A 542.2
(-0.5)
P 		885
(3)
P 		291
(-3)
A 		300.6
(-2.9)
P 		622.2
(0.3)
P 		327.7
(-2.6)
P 		594
B 652
(1.8)
P 		729.7
(3)
P 		334.8
(-3)
P 		338.6
(-2.9)
P 		490.4
(-0.6)
P 		502.7
(-0.4)
P 		395
C 1109.7
(3)
P 		679.1
(0.2)
P 		516.2
(-0.9)
P 		198.2
(-3)
P 		503.8
(-1)
P 		391.5
(-1.7)
P 		912
avr 768
(3) 		764.6
(3) 		380.7
(-1.8) 		279.1
(-3) 		538.8
(0.2) 		407.3
(-1.4) 		489
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 243
(3)
P 		60.3
(-2.4)
P 		103.8
(-1.1)
P 		41
(-3)
P 		202
B 320.6
(3)
P 		76.2
(-2.4)
P 		50.7
(-3)
P 		120.6
(-1.4)
P 		270
C 181.9
(3)
P 		93
(-3)
P 		148.2
(0.7)
P 		118.2
(-1.3)
P 		89
avr 248.5
(3) 		76.5
(-3) 		100.9
(-2.1) 		93.3
(-2.4) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 371
1 2 3 4 5 6 range
A 99.9
(-2.1)
P 		314.7
(3)
P 		63.4
(-3)
A 		76.2
(-2.7)
P 		187.8
(-0)
P 		79.8
(-2.6)
P 		251
B 226.8
(2.4)
P 		242.9
(3)
P 		81.3
(-3)
P 		89.7
(-2.7)
P 		199.2
(1.4)
P 		187.5
(0.9)
P 		162
C 411.3
(3)
P 		207.2
(-0.3)
P 		131.4
(-1.5)
P 		39.9
(-3)
P 		163
(-1)
P 		131
(-1.5)
P 		371
avr 246
(2.7) 		254.9
(3) 		92
(-2.2) 		68.6
(-3) 		183.3
(0.7) 		132.8
(-0.9) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22327
Sequence Type Exemplar sequence
Representative Public ID CEK065FXR NCBI
Target Description CEK065FXR_rc /REP_DB=TREMBL Accession /GB=D65656 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk65f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029684(11), NM_001029682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029684 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-1) (nhr-1) mRNA, complete cds. 11/11 None
NM_001029682 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-1) (nhr-1) mRNA, complete cds. 11/11 None
R09G11.2c ENSEMBL cdna:known chromosome:CEL140:X:17518353:17528111:1 gene:R09G11.2 11/11 A 
R09G11.2a.1 ENSEMBL cdna:known chromosome:CEL140:X:17518360:17528111:1 gene:R09G11.2 11/11 A 
R09G11.2a.2 ENSEMBL cdna:known chromosome:CEL140:X:17519761:17528111:1 gene:R09G11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181783 4 2 NM_001029682 174901_at (11), 192168_at (10)
NM_001029683 192168_at (10)
NM_001029684 174901_at (11), 192168_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17527760-17528082(+) 100.0 100.0
Public Domain and Genome References
Ensembl R09G11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024855 Nuclear Hormone Receptor family member (nhr-1) [Caenorhabditis elegans] gb|AAO39168.1| nuclear receptor NHR-1 [Caenorhabditis elegans] gb|AAO39167.1| nuclear receptor NHR-1 [Caenorhabditis elegans] gb|AAC48174.4| Nuclear hormone receptor family protein 1, isoform c [Caenorhabditis elegans] 0.0
blast NP_001024853 Nuclear Hormone Receptor family member (nhr-1) [Caenorhabditis elegans] gb|AAO39169.1| nuclear receptor NHR-1 [Caenorhabditis elegans] gb|AAP46277.1| Nuclear hormone receptor family protein 1, isoform a [Caenorhabditis elegans] sp|Q21878|NHR1_CAEEL Nuclear hormone receptor family member nhr-1 0.0
blast AAO39170 nuclear receptor NHR-1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.1E-39
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 8.7E-42
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.1E-39
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.9E-38
Sequence
Target Sequence 
>C. ELEGANS:174901_AT
ttcctcttccaagcattgtcatcgattgcaattttttcaaattattcatgtttcaacaaa
aaatgtttcctctataaaaacccctattatttactggtatcaattcttttattttctccc
taccacgattttgggctgatttatctttttttcccaaattttttaaccagtaaaaaaatt
ggttttggtatttttgatttccgattgccccttacaaaattcttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTCTTCCAAGCATTGTCATCGA 68 701 48 Antisense
TTGTCATCGATTGCAATTTTTTCAA 72 705 63 Antisense
TTTCAAATTATTCATGTTTCAACAA 659 671 82 Antisense
ACCCCTATTATTTACTGGTATCAAT 162 89 127 Antisense
CTGGTATCAATTCTTTTATTTTCTC 71 241 141 Antisense
TTTCTCCCTACCACGATTTTGGGCT 150 623 160 Antisense
TACCACGATTTTGGGCTGATTTATC 424 651 168 Antisense
GCTGATTTATCTTTTTTTCCCAAAT 449 295 182 Antisense
TGGTATTTTTGATTTCCGATTGCCC 481 551 233 Antisense
TTCCGATTGCCCCTTACAAAATTCT 137 699 246 Antisense
GATTGCCCCTTACAAAATTCTTGAT 82 319 250 Antisense
Sequence Source Affymetrix Proprietary Database