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[174900_at]

Description CEK016DXR_rc /REP_DB=TREMBL Accession /GB=D27642 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 66      6grp_total > 36      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 884
1 2 3 4 range
A 1768.7
(2.7)
P 		1168.3
(-2.8)
P 		1144.7
(-3)
P 		1798.6
(3)
P 		654
B 1782.6
(3)
P 		1323.2
(-0.8)
P 		1047.7
(-3)
P 		1659.9
(2)
P 		735
C 1931.4
(3)
P 		1237.6
(-3)
P 		1247.6
(-2.9)
P 		1544.1
(-0.3)
P 		694
avr 1827.6
(3) 		1243
(-2.2) 		1146.7
(-3) 		1667.5
(1.6) 		681

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 989
1 2 3 4 5 6 range
A 1746.9
(3)
P 		1513.7
(0.9)
P 		1218.5
(-1.7)
P 		1070.3
(-3)
P 		1168.6
(-2.1)
P 		1355.6
(-0.5)
P 		677
B 2059.7
(3)
P 		1725.3
(0.8)
P 		1443.7
(-1.1)
P 		1427.3
(-1.2)
P 		1149.4
(-3)
P 		1613.4
(0.1)
P 		910
C 1438.1
(1.2)
P 		1569
(3)
P 		1202.2
(-2)
P 		1304
(-0.6)
P 		1128.3
(-3)
P 		1428.8
(1.1)
P 		441
avr 1748.2
(3) 		1602.7
(1.5) 		1288.1
(-1.6) 		1267.2
(-1.8) 		1148.8
(-3) 		1465.9
(0.2) 		599
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 644
(3)
P 		253.6
(-3)
P 		299.3
(-2.3)
P 		263.3
(-2.9)
P 		390
B 568.5
(3)
P 		326.8
(-1.5)
P 		242.8
(-3)
P 		353.7
(-1)
P 		326
C 639.3
(3)
P 		355.8
(-1.5)
P 		434.8
(-0.2)
P 		260.4
(-3)
P 		379
avr 617.3
(3) 		312.1
(-2.6) 		325.6
(-2.4) 		292.5
(-3) 		325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 455
1 2 3 4 5 6 range
A 322
(-1.8)
P 		538.4
(3)
P 		265.4
(-3)
P 		271.5
(-2.9)
P 		352.6
(-1.1)
P 		330.1
(-1.6)
P 		273
B 716.7
(3)
P 		574.3
(0.7)
P 		350.6
(-3)
P 		378
(-2.6)
P 		467
(-1.1)
P 		601.6
(1.1)
P 		366
C 533
(3)
P 		478.8
(1.8)
P 		306
(-2)
P 		262.2
(-3)
P 		365.1
(-0.7)
P 		478.3
(1.8)
P 		271
avr 523.9
(2.8) 		530.5
(3) 		307.3
(-2.9) 		303.9
(-3) 		394.9
(-0.6) 		470
(1.4) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174900_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20971
Sequence Type Exemplar sequence
Representative Public ID CEK016DXR NCBI
Target Description CEK016DXR_rc /REP_DB=TREMBL Accession /GB=D27642 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066313(11), NM_181934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066313 NCBI Caenorhabditis elegans ZK688.5a (ZK688.5) mRNA, complete cds. 11/11 None
NM_181934 NCBI Caenorhabditis elegans ZK688.5b (ZK688.5) mRNA, complete cds. 11/11 None
ZK688.5a ENSEMBL cdna:known chromosome:CEL140:III:7885014:7891484:-1 gene:ZK688.5 11/11 None
ZK688.5b ENSEMBL cdna:known chromosome:CEL140:III:7885022:7891539:-1 gene:ZK688.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043625 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043643 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7885029-7885434(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK688.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00883 Hypothetical protein ZK688.5a [Caenorhabditis elegans] ref|NP_498714.1| ZK688.5a [Caenorhabditis elegans] sp|P34675|YO25_CAEEL Hypothetical protein ZK688.5 in chromosome III 0.0
blast AAO12390 Hypothetical protein ZK688.5b [Caenorhabditis elegans] ref|NP_871663.1| ZK688.5b [Caenorhabditis elegans] 0.0
blast CAE66884 Hypothetical protein CBG12265 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 7.0E-15
Sequence
Target Sequence 
>C. ELEGANS:174900_AT
aatcatcatcttctggaacacgaacttcatcaggatcttcaggtccatcaacttcatcaa
caactacaaacaatatccagtgaaatgtatcggaatataattggaaatcatcgggttata
gtacagtcttcggtggattagttttaatcaaaattggccgcctcgttcatgatatctcaa
caatgccggttttcgagactaagaaacgttattttacggtttaggttcaaatatacctac
aattaattgttcatatctatttatttaactatgttcatttgtagtttgaattgtttgact
tgcaattcaatctgtgctcctatcagctaacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCATCATCTTCTGGAACACGAAC 28 171 25 Antisense
GAACACGAACTTCATCAGGATCTTC 420 351 40 Antisense
CATCAGGATCTTCAGGTCCATCAAC 706 211 52 Antisense
TCAGGTCCATCAACTTCATCAACAA 129 623 63 Antisense
ATCGGGTTATAGTACAGTCTTCGGT 666 33 134 Antisense
GTACAGTCTTCGGTGGATTAGTTTT 228 461 145 Antisense
AATCAAAATTGGCCGCCTCGTTCAT 693 169 170 Antisense
CCGCCTCGTTCATGATATCTCAACA 239 263 182 Antisense
TATCTCAACAATGCCGGTTTTCGAG 122 657 197 Antisense
GACTTGCAATTCAATCTGTGCTCCT 594 371 321 Antisense
ATCTGTGCTCCTATCAGCTAACAAG 368 33 334 Antisense
Sequence Source Affymetrix Proprietary Database