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[174898_at]

Description CEK015B7R_rc /REP_DB=TREMBL Accession /GB=D27607 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 74      6grp_total > 49      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 566
1 2 3 4 range
A 818.9
(3)
P 		549.7
(-0.5)
P 		793.9
(2.7)
P 		359.6
(-3)
P 		459
B 887.6
(3)
P 		814.5
(1.9)
P 		554.5
(-2.2)
P 		500.9
(-3)
P 		387
C 722.6
(0.4)
P 		925.8
(3)
P 		777.5
(1.1)
P 		465.5
(-3)
P 		460
avr 809.7
(3) 		763.3
(2.2) 		708.6
(1.4) 		442
(-3) 		368

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 564
1 2 3 4 5 6 range
A 800.8
(1.8)
P 		554.9
(-0.8)
P 		737.5
(1.1)
P 		350.5
(-3)
P 		911.5
(3)
P 		883.1
(2.7)
P 		561
B 867.7
(2.4)
P 		540.4
(-1.7)
P 		433.7
(-3)
P 		914.3
(3)
P 		695.1
(0.3)
P 		740.5
(0.8)
P 		481
C 794.9
(3)
P 		791.1
(2.9)
P 		466.3
(-3)
P 		517.9
(-2.1)
P 		522.6
(-2)
P 		577.4
(-1)
P 		329
avr 821.1
(3) 		628.8
(-1.2) 		545.8
(-3) 		594.2
(-1.9) 		709.7
(0.6) 		733.7
(1.1) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 298.2
(3)
P 		119.3
(-1.4)
P 		207.5
(0.8)
P 		52.6
(-3)
P 		246
B 283.1
(3)
P 		201.2
(0.2)
P 		128.5
(-2.3)
P 		106.7
(-3)
P 		176
C 239.2
(2)
P 		266.2
(2.9)
P 		271
(3)
P 		78.5
(-3)
P 		193
avr 273.5
(3) 		195.6
(0.6) 		202.3
(0.8) 		79.3
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 147.6
(-1.1)
P 		197.4
(0.5)
P 		160.6
(-0.7)
P 		88.9
(-3)
P 		275
(3)
P 		215
(1.1)
P 		186
B 301.9
(3)
P 		179.9
(-0.7)
P 		105.3
(-3)
P 		242.2
(1.2)
P 		282.4
(2.4)
P 		276.1
(2.2)
P 		197
C 294.6
(3)
P 		241.4
(1.3)
P 		118.7
(-2.5)
P 		104.1
(-3)
P 		169.1
(-1)
P 		193.3
(-0.2)
P 		191
avr 248
(3) 		206.2
(0.9) 		128.2
(-3) 		145.1
(-2.2) 		242.2
(2.7) 		228.1
(2) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174898_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21574
Sequence Type Exemplar sequence
Representative Public ID CEK015B7R NCBI
Target Description CEK015B7R_rc /REP_DB=TREMBL Accession /GB=D27607 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067883(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067883 NCBI Caenorhabditis elegans Y67D8C.5 (Y67D8C.5) mRNA, complete cds. 11/11 None
Y67D8C.5 ENSEMBL cdna:known chromosome:CEL140:IV:3032726:3049968:-1 gene:Y67D8C.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3032786-3033133(-) 93.66 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8C.5
Entrez Gene 177084 Entrez gene
SwissProt Q9GUP2 EMBL-EBI
WormBase CE31665 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4842 ubiquitin-protein ligase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG23375 Hypothetical protein Y67D8C.5 [Caenorhabditis elegans] ref|NP_500284.2| Y67D8C.5 [Caenorhabditis elegans] 0.0
blast CAE59883 Hypothetical protein CBG03363 [Caenorhabditis briggsae] 0.0
blast CAI42656 upstream regulatory element binding protein 1 (UREB1) [Homo sapiens] emb|CAI39581.1| upstream regulatory element binding protein 1 (UREB1) [Homo sapiens] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR010309 EMBL-EBI Protein of unknown function DUF908 1.0E-126
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 6.2E-9
Pfam IPR000569 EMBL-EBI HECT domain (Ubiquitin-protein ligase) 1.0E-126
Pfam IPR010314 EMBL-EBI Protein of unknown function DUF913 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174898_AT
tcgtttcttaaagcttctcttattttccctgatacgtggtccccgttaacattatgcact
ttaaaaacagactttttggtctctctctctctctctctctatgtttattttttaacgttt
gttttattgtccataatattcaaattcccctcatattatttcccgtcctcctcccaacca
atcccggcttgatttctgagctttttagccttcccccgatcatatactattcatttttca
attgtctcctgacctcccccatccgcccaatttattattgtgtatccccgtttatgtgtg
tgtgtggtttcaagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTTCTTAAAGCTTCTCTTATTT 197 605 13 Antisense
TTCTCTTATTTTCCCTGATACGTGG 514 691 27 Antisense
CTGATACGTGGTCCCCGTTAACATT 109 221 41 Antisense
GTCCCCGTTAACATTATGCACTTTA 292 473 51 Antisense
AAAACAGACTTTTTGGTCTCTCTCT 271 131 76 Antisense
TAACGTTTGTTTTATTGTCCATAAT 152 639 125 Antisense
CAACCAATCCCGGCTTGATTTCTGA 282 185 187 Antisense
GCTTGATTTCTGAGCTTTTTAGCCT 225 307 199 Antisense
CCGATCATATACTATTCATTTTTCA 364 263 228 Antisense
TTATTATTGTGTATCCCCGTTTATG 403 677 284 Antisense
TATGTGTGTGTGTGGTTTCAAGTTT 565 653 305 Antisense
Sequence Source Affymetrix Proprietary Database