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[174896_at] terminase domain

Description CEK088D3R_rc /REP_DB=TREMBL Accession /GB=D64804 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88d3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 81      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 54      6grp_total > 91      4grp_total > 59      6grp_highest_sub > 05      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1473
1 2 3 4 range
A 1312.6
(0.9)
P 		1183.8
(0.3)
P 		1837.9
(3)
P 		364.6
(-3)
P 		1473
B 1252.8
(0.9)
P 		1515.8
(2.2)
P 		1665.1
(3)
P 		509.2
(-3)
P 		1156
C 928.4
(-0.7)
P 		1389
(1.5)
P 		1704.4
(3)
P 		429.1
(-3)
P 		1275
avr 1164.6
(0.4) 		1362.9
(1.3) 		1735.8
(3) 		434.3
(-3) 		1302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1317
1 2 3 4 5 6 range
A 876
(-2.1)
P 		1250.9
(0.2)
P 		891.8
(-2)
P 		1585.4
(2.2)
P 		1716.4
(3)
P 		731.7
(-3)
P 		985
B 917
(-1.3)
P 		1125.1
(-0.3)
P 		540.3
(-3)
P 		1857.6
(3)
P 		1464
(1.2)
P 		822.6
(-1.7)
P 		1317
C 865.8
(-2.4)
P 		1099
(-0.4)
P 		1099
(-0.4)
P 		1489.7
(3)
P 		1449.6
(2.7)
P 		796.8
(-3)
P 		693
avr 886.3
(-2.3) 		1158.3
(-0.4) 		843.7
(-2.6) 		1644.2
(3) 		1543.3
(2.3) 		783.7
(-3) 		861
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 541
1 2 3 4 range
A 477.9
(3)
P 		257
(-0.1)
P 		480.5
(3)
P 		53.4
(-3)
P 		427
B 399.5
(3)
P 		374.4
(2.5)
P 		385.8
(2.7)
P 		108.5
(-3)
P 		291
C 307.3
(-0.3)
P 		399.4
(0.8)
P 		594
(3)
P 		72.4
(-3)
P 		522
avr 394.9
(1.7) 		343.6
(0.9) 		486.8
(3) 		78.1
(-3) 		409

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 464
1 2 3 4 5 6 range
A 161.5
(-3)
P 		444.9
(1.8)
P 		194.2
(-2.4)
P 		402.1
(1.1)
P 		517.9
(3)
P 		178.1
(-2.7)
P 		356
B 319.1
(-0.6)
P 		374.5
(0.1)
P 		131.2
(-3)
P 		492
(1.7)
P 		594.8
(3)
P 		306.7
(-0.7)
P 		464
C 320.9
(-1.4)
P 		335.3
(-1)
P 		279.7
(-2.6)
P 		299.6
(-2)
P 		469.1
(3)
P 		266.7
(-3)
P 		202
avr 267.2
(-1.8) 		384.9
(0.4) 		201.7
(-3) 		397.9
(0.6) 		527.3
(3) 		250.5
(-2.1) 		326
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22032
Sequence Type Exemplar sequence
Representative Public ID CEK088D3R NCBI
Target Description CEK088D3R_rc /REP_DB=TREMBL Accession /GB=D64804 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077317 NCBI Caenorhabditis elegans C14H10.3 (C14H10.3) mRNA, complete cds. 11/11 None
C14H10.3 ENSEMBL cdna:known chromosome:CEL140:X:10220587:10224479:-1 gene:C14H10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10220596-10220930(-) 100.0 100.0
Public Domain and Genome References
Gene Title terminase domain
Ensembl C14H10.3
Entrez Gene 181232 Entrez gene
SwissProt Q17995 EMBL-EBI
WormBase CE03020 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599224_AT similar to CG1486-PA, isoform A cfa
CANINE_2:CFAAFFX.28664.1.S1_AT similar to CG1486-PA, isoform A cfa
CANINE_2:CFAAFFX.28669.1.S1_S_AT similar to CG1486-PA, isoform A cfa
DROSOPHILA_2:1636928_S_AT dm
DROSGENOME1:151790_AT dm
CHICKEN:GGA.11369.1.A1_AT similar to KIAA0251 protein gga
CHICKEN:GGA.19120.1.S1_AT similar to KIAA0251 protein gga
CHICKEN:GGAAFFX.25639.1.S1_AT similar to KIAA0251 protein gga
HG-U133A:212053_AT KIAA0251 protein hs
HG-U133_PLUS_2:212053_AT KIAA0251 protein hs
HG-U133A_2:212053_AT KIAA0251 protein hs
HG-U133_PLUS_2:232288_AT KIAA0251 protein hs
HG-U133B:232288_AT KIAA0251 protein hs
HG-U133_PLUS_2:229219_S_AT KIAA0251 protein hs
HG-U133B:229219_S_AT KIAA0251 protein hs
HU35KSUBA:D83838_AT KIAA0251 protein hs
HUGENEFL:D87438_AT KIAA0251 protein hs
U133_X3P:HS2.378192.1.S1_3P_S_AT KIAA0251 protein hs
U133_X3P:HS2.378192.1.S1_3P_AT KIAA0251 protein hs
U133_X3P:HS2.375549.1.S1_3P_AT KIAA0251 protein hs
U133_X3P:HS.170218.1.A1_3P_AT KIAA0251 protein hs
U133_X3P:HS.170218.0.A1_3P_AT KIAA0251 protein hs
U133_X3P:1560013_3P_AT KIAA0251 protein hs
HG-U133_PLUS_2:1555347_AT KIAA0251 protein hs
HG-U133_PLUS_2:1560013_AT KIAA0251 protein hs
HG-U133_PLUS_2:1560014_S_AT KIAA0251 protein hs
HG-U95AV2:40765_AT KIAA0251 protein hs
HU35KSUBC:RC_N70298_AT KIAA0251 protein hs
U133_X3P:HS2.431319.1.A1_3P_AT KIAA0251 protein hs
U133_X3P:HS.49829.0.A1_3P_AT KIAA0251 protein hs
HG-U133_PLUS_2:1558430_AT KIAA0251 protein hs
HG-U133_PLUS_2:237354_AT KIAA0251 protein hs
HG-U133B:237354_AT KIAA0251 protein hs
HG-U95C:53252_AT KIAA0251 protein hs
HG-U95B:48369_AT KIAA0251 protein hs
HG-U95B:48370_G_AT KIAA0251 protein hs
HG-U95B:59401_AT KIAA0251 protein hs
HG-U95E:83620_AT KIAA0251 protein hs
HG-U95E:91059_AT KIAA0251 protein hs
HU35KSUBD:RC_AA292706_AT KIAA0251 protein hs
HU35KSUBD:RC_AA400128_AT KIAA0251 protein hs
U133_X3P:HS.165328.0.A1_3P_AT KIAA0251 protein hs
MG-U74AV2:97713_AT expressed sequence AA415817 mm
MOE430A:1419327_AT expressed sequence AA415817 mm
MOUSE430_2:1419327_AT expressed sequence AA415817 mm
MOUSE430A_2:1419327_AT expressed sequence AA415817 mm
MOE430A:1436372_A_AT expressed sequence AA415817 mm
MOUSE430A_2:1436372_A_AT expressed sequence AA415817 mm
MOUSE430_2:1436372_A_AT expressed sequence AA415817 mm
MU11KSUBA:AA060904_AT expressed sequence AA415817 mm
MU11KSUBA:AA415817_RC_AT expressed sequence AA415817 mm
MG-U74AV2:94312_AT expressed sequence AA415817 mm
MG-U74AV2:160163_AT expressed sequence AA415817 mm
MOE430A:1452705_AT expressed sequence AA415817 mm
MOUSE430A_2:1452705_AT expressed sequence AA415817 mm
MOUSE430_2:1452705_AT expressed sequence AA415817 mm
MU19KSUBA:TC24798_AT Expressed sequence AA415817 (AA415817), transcript variant 1, mRNA mm
MU19KSUBB:TC28131_AT Expressed sequence AA415817 (AA415817), transcript variant 1, mRNA mm
RG-U34B:RC_AA956381_AT similar to expressed sequence AA415817 rn
RAE230A:1374197_AT Similar to expressed sequence AA415817 rn
RAT230_2:1374197_AT Similar to expressed sequence AA415817 rn
RAE230B:1391968_AT Similar to expressed sequence AA415817 rn
RAT230_2:1391968_AT Similar to expressed sequence AA415817 rn
Protein Similarities
Method ID Description E-Value
blast CAA90735 Hypothetical protein C14H10.3 [Caenorhabditis elegans] ref|NP_509718.1| C14H10.3 [Caenorhabditis elegans] 0.0
blast CAE70549 Hypothetical protein CBG17192 [Caenorhabditis briggsae] 0.0
blast XP_393418 PREDICTED: similar to GA13300-PA [Apis mellifera] 2.0E-60
Sequence
Target Sequence 
>C. ELEGANS:174896_AT
gttgtgaccgactaactgttcgaatttttatatacactttggttatactttcctcgtgcg
tcttttcgttttctgacagtattccgtgttcagttttcgctttctgtgttttcttcccac
atagttttttgactggttagccccctactgctcgtctcggttaagcctattttcctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTGACCGACTAACTGTTCGAAT 434 435 78 Antisense
GTTCGAATTTTTATATACACTTTGG 393 439 95 Antisense
ACTTTGGTTATACTTTCCTCGTGCG 419 95 113 Antisense
TGCGTCTTTTCGTTTTCTGACAGTA 607 583 134 Antisense
GTTTTCTGACAGTATTCCGTGTTCA 247 449 145 Antisense
TATTCCGTGTTCAGTTTTCGCTTTC 389 665 157 Antisense
CAGTTTTCGCTTTCTGTGTTTTCTT 168 207 168 Antisense
TTTCTGTGTTTTCTTCCCACATAGT 615 671 178 Antisense
TTTCTTCCCACATAGTTTTTTGACT 513 669 187 Antisense
TGCTCGTCTCGGTTAAGCCTATTTT 497 581 226 Antisense
TCTCGGTTAAGCCTATTTTCCTCAA 276 609 232 Antisense
Sequence Source Affymetrix Proprietary Database