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[174894_at]

Description CEK046H2R_rc /REP_DB=TREMBL Accession /GB=D34504 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk46h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 43      4grp_high_8_8 > 48      6grp_highest_nonorm > 30      6grp_total > 04      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 688
1 2 3 4 range
A 971.6
(3)
P 		451.4
(-3)
P 		773.4
(0.7)
P 		676.1
(-0.4)
P 		520
B 1139.4
(3)
P 		546.7
(-3)
P 		702.2
(-1.4)
P 		678.6
(-1.7)
P 		593
C 943.2
(3)
P 		783.3
(0.3)
P 		748.6
(-0.3)
P 		590
(-3)
P 		353
avr 1018.1
(3) 		593.8
(-3) 		741.4
(-0.9) 		648.2
(-2.2) 		424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 638
1 2 3 4 5 6 range
A 1024.7
(3)
P 		885.6
(1.1)
P 		578.4
(-3)
P 		714.9
(-1.2)
P 		823
(0.3)
P 		616.1
(-2.5)
P 		446
B 1137
(3)
P 		941.8
(1.1)
P 		569.4
(-2.5)
P 		1097.4
(2.6)
P 		518.9
(-3)
P 		571.3
(-2.5)
P 		618
C 1127.1
(3)
P 		769.7
(-0.4)
P 		805.4
(-0.1)
P 		799.5
(-0.1)
P 		564.3
(-2.4)
P 		499.2
(-3)
P 		628
avr 1096.3
(3) 		865.7
(0.4) 		651.1
(-2) 		870.6
(0.5) 		635.4
(-2.2) 		562.2
(-3) 		534
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 353.8
(3)
P 		98
(-3)
P 		202.2
(-0.6)
P 		99
(-3)
P 		256
B 363.3
(3)
P 		135
(-3)
P 		162.7
(-2.3)
P 		144.6
(-2.7)
P 		228
C 312.2
(3)
P 		225.2
(0.5)
P 		260.9
(1.6)
P 		99.5
(-3)
P 		213
avr 343.1
(3) 		152.7
(-2) 		208.6
(-0.5) 		114.4
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 188.9
(-1)
P 		314.9
(3)
P 		126
(-3)
P 		181.3
(-1.2)
P 		248.3
(0.9)
P 		150
(-2.2)
P 		189
B 395.6
(3)
P 		313.5
(1.1)
P 		138.3
(-3)
P 		290.7
(0.6)
P 		210.8
(-1.3)
P 		213
(-1.3)
P 		257
C 417.8
(3)
P 		234.9
(-1.3)
P 		205
(-2)
P 		160.8
(-3)
P 		182.6
(-2.5)
P 		167.1
(-2.9)
P 		257
avr 334.1
(3) 		287.8
(1.4) 		156.4
(-3) 		210.9
(-1.2) 		213.9
(-1.1) 		176.7
(-2.3) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22255
Sequence Type Exemplar sequence
Representative Public ID CEK046H2R NCBI
Target Description CEK046H2R_rc /REP_DB=TREMBL Accession /GB=D34504 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk46h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F21A10.2a.3 ENSEMBL cdna:known chromosome:CEL140:X:10180880:10194305:-1 gene:F21A10.2 11/11 A 
F21A10.2a.2 ENSEMBL cdna:known chromosome:CEL140:X:10180880:10189130:-1 gene:F21A10.2 11/11 A 
F21A10.2a.1 ENSEMBL cdna:known chromosome:CEL140:X:10180880:10188710:-1 gene:F21A10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10180900-10181484(-) 93.84 100.0
Public Domain and Genome References
Ensembl F21A10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44121 Hypothetical protein F21A10.2b [Caenorhabditis elegans] ref|NP_741883.1| F21A10.2b [Caenorhabditis elegans] 0.0
blast CAD44135 Hypothetical protein F21A10.2c [Caenorhabditis elegans] emb|CAD44122.1| Hypothetical protein F21A10.2c [Caenorhabditis elegans] ref|NP_509709.2| F21A10.2c [Caenorhabditis elegans] 0.0
blast CAA16508 Hypothetical protein F21A10.2a [Caenorhabditis elegans] ref|NP_741884.1| F21A10.2a [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
F21A10.2a.3 1 624-646
F21A10.2a.2 1 624-646
F21A10.2a.1 1 624-646
Sequence
Target Sequence 
>C. ELEGANS:174894_AT
tgacgcattttctcactgatctttacattgttgcatgtaaaaaatgcccaactctctctc
cctcccactctctctctctctttctcttgtcattttccaaacattttctttaaagtctct
ccttctgaaatttttggatactatgttatcatgttattttgtacttaccgtactcaatgg
ccattgccatcctcggcccagtgttttattttgcgtcgtgcttgtgtatttatcgcattc
ttctcattcactctcttcctccaaacttgtagcatctcgctttgttcatgtagttgttgt
acgcgtacgttgaaaataagtttaagaaaaagtcaataatttttatccgttgtcctctta
gttttccatttgatgtcattactgttatttataaatactcatcaaacttgttgtatgtga
gtattgcatatgcgccaacaaacctcctcatccctacacgcccacaacggaaaacagttt
ggacttttttgttttgaaaaatcgtatctcatcacacacgccctgatgtttgtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGCATTTTCTCACTGATCTTTA 452 569 23 Antisense
TGTAAAAAATGCCCAACTCTCTCTC 426 559 58 Antisense
TCTCTTTCTCTTGTCATTTTCCAAA 335 613 99 Antisense
TTTTCTTTAAAGTCTCTCCTTCTGA 532 675 126 Antisense
ACTCAATGGCCATTGCCATCCTCGG 359 99 194 Antisense
CATCCTCGGCCCAGTGTTTTATTTT 603 211 210 Antisense
TGTATTTATCGCATTCTTCTCATTC 395 561 247 Antisense
TCTCTTCCTCCAAACTTGTAGCATC 254 613 274 Antisense
GTAGCATCTCGCTTTGTTCATGTAG 186 457 291 Antisense
TTGTCCTCTTAGTTTTCCATTTGAT 574 703 372 Antisense
TCACACACGCCCTGATGTTTGTATT 251 629 534 Antisense
Sequence Source Affymetrix Proprietary Database