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[174893_at]

Description CEK043C3R_rc /REP_DB=TREMBL Accession /GB=D34248 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43c3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 48      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_total > 38      4grp_total > 20      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 102.9
(0.3)
P 		116.2
(1.5)
P 		67.5
(-3)
P 		132.3
(3)
P 		65
B 106.4
(3)
P 		99.2
(1.6)
P 		75.9
(-3)
P 		96
(1)
P 		31
C 137
(-0.1)
P 		105.1
(-3)
P 		140.3
(0.2)
P 		172
(3)
P 		67
avr 115.4
(0.2) 		106.8
(-1.1) 		94.6
(-3) 		133.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 102.5
(0.6)
A 		148.8
(3)
P 		32.7
(-3)
A 		72.9
(-0.9)
A 		127.9
(1.9)
P 		138.1
(2.4)
P 		116
B 164.2
(3)
P 		131
(0.7)
P 		78.5
(-3)
P 		83.2
(-2.7)
P 		80.2
(-2.9)
P 		133.6
(0.9)
P 		86
C 139.2
(3)
P 		83
(-3)
P 		99
(-1.3)
P 		91.3
(-2.1)
M 		133.9
(2.4)
P 		110.7
(-0)
M 		56
avr 135.3
(3) 		120.9
(1.7) 		70.1
(-3) 		82.5
(-1.9) 		114
(1) 		127.5
(2.3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 37.5
(3)
P 		25.2
(-0.7)
P 		17.6
(-3)
P 		19.4
(-2.5)
P 		20
B 33.9
(3)
P 		24.5
(-0.5)
P 		17.6
(-3)
P 		20.4
(-2)
P 		16
C 45.3
(1.9)
P 		30.2
(-2.6)
P 		48.9
(3)
P 		29
(-3)
P 		20
avr 38.9
(3) 		26.6
(-1.6) 		28
(-1.1) 		22.9
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 18.9
(-1.5)
A 		52.9
(3)
P 		7.1
(-3)
A 		18.5
(-1.5)
A 		38.6
(1.1)
P 		33.6
(0.5)
P 		46
B 57.1
(3)
P 		43.6
(0.9)
P 		19.1
(-3)
P 		22
(-2.5)
P 		32.6
(-0.9)
P 		49.8
(1.8)
P 		38
C 51.6
(3)
P 		25.3
(-1.8)
P 		25.2
(-1.8)
P 		18.4
(-3)
M 		43.3
(1.5)
P 		37
(0.4)
M 		33
avr 42.5
(3) 		40.6
(2.6) 		17.1
(-3) 		19.6
(-2.4) 		38.2
(2) 		40.1
(2.4) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174893_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20405
Sequence Type Exemplar sequence
Representative Public ID CEK043C3R NCBI
Target Description CEK043C3R_rc /REP_DB=TREMBL Accession /GB=D34248 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059441(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059441 NCBI Caenorhabditis elegans defective in Germ Line Development family member (gld-2) (gld-2) mRNA, complete cds. 11/11 A 
ZC308.1a ENSEMBL cdna:known chromosome:CEL140:I:6378100:6394278:1 gene:ZC308.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172338 4 1 NM_059440 182181_at (11)
NM_059441 172979_at (11), 174893_at (11), 182981_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6393391-6393735(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC308.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70342 Defective in germ line development protein 2, isoform a [Caenorhabditis elegans] ref|NP_491842.2| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] gb|AAM94369.1| regulatory cytoplasmic polyA polymerase [Caenorhabditis elegans] 0.0
blast AAO21479 Defective in germ line development protein 2, isoform d [Caenorhabditis elegans] ref|NP_001021845.1| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] 0.0
blast AAO21478 Defective in germ line development protein 2, isoform c [Caenorhabditis elegans] ref|NP_491841.2| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 9.8E-11
Sequence
Target Sequence 
>C. ELEGANS:174893_AT
ccattttctctatgctatcaggatcatttgttcctcgaaaatcatctatcagatatgtga
tgatctctacaattttttagttcttcccactatggccttctctccacccacatttccctg
tattttaacacgaaaagttcaaaacgaggtacacgtttcaaccacaccacatagctcttt
tcccactccttcaatcctccctaaaatacaaattatatgtacaaactttcgaaaaatcaa
caaaaaaaattgcaaacatttgaaaatcccattgatttttgcgaattttcagaatacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTTTCTCTATGCTATCAGGATC 617 269 28 Antisense
GCTATCAGGATCATTTGTTCCTCGA 40 305 41 Antisense
TTTGTTCCTCGAAAATCATCTATCA 154 667 54 Antisense
GATATGTGATGATCTCTACAATTTT 675 425 79 Antisense
CAATTTTTTAGTTCTTCCCACTATG 235 181 97 Antisense
CCACATTTCCCTGTATTTTAACACG 222 273 135 Antisense
TCCTTCAATCCTCCCTAAAATACAA 663 589 214 Antisense
CAAATTATATGTACAAACTTTCGAA 366 193 236 Antisense
CAAACATTTGAAAATCCCATTGATT 672 191 280 Antisense
ATCCCATTGATTTTTGCGAATTTTC 192 39 293 Antisense
GATTTTTGCGAATTTTCAGAATACG 284 429 301 Antisense
Sequence Source Affymetrix Proprietary Database