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[174891_s_at]

Description CEK014FXR_rc /REP_DB=TREMBL Accession /GB=D27583 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 19      4grp_high_8_8 > 55      6grp_highest_nonorm > 73      6grp_total > 90      4grp_total > 56      6grp_highest_sub > 04_05      6grp_cgc > 96      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 399.8
(-2.3)
P 		388.9
(-3)
P 		482.7
(3)
P 		415.8
(-1.3)
P 		94
B 360.5
(-3)
P 		422.6
(3)
P 		398.7
(0.7)
P 		389.7
(-0.2)
P 		62
C 429.2
(-1.1)
P 		468.4
(0.9)
P 		508.8
(3)
P 		393.5
(-3)
P 		115
avr 396.5
(-3) 		426.6
(-0.3) 		463.4
(3) 		399.7
(-2.7) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 482.8
(-0.4)
P 		400.8
(-2.4)
P 		515.5
(0.4)
P 		537.8
(0.9)
P 		621.8
(3)
P 		377
(-3)
P 		245
B 510.6
(-1.6)
P 		491.5
(-2)
P 		436.5
(-3)
P 		751.1
(3)
P 		556.3
(-0.7)
P 		510.5
(-1.6)
P 		315
C 531.7
(-0.3)
P 		522.4
(-0.5)
P 		461
(-2.4)
P 		641.2
(3)
P 		453.5
(-2.6)
P 		439.2
(-3)
P 		202
avr 508.4
(-1) 		471.6
(-2.1) 		471
(-2.1) 		643.4
(3) 		543.9
(0) 		442.2
(-3) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 145.6
(3)
P 		84.4
(-1.3)
P 		126.2
(1.6)
P 		60.9
(-3)
P 		85
B 115
(3)
P 		104.4
(1)
P 		92.4
(-1.2)
P 		83
(-3)
P 		32
C 142.1
(1.1)
P 		134.7
(0.7)
P 		177.3
(3)
P 		66.3
(-3)
P 		111
avr 134.2
(3) 		107.8
(0.5) 		132
(2.8) 		70.1
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 89
(-3)
P 		142.5
(0.3)
P 		112.3
(-1.6)
P 		136.4
(-0.1)
P 		187.6
(3)
P 		91.8
(-2.8)
P 		99
B 177.7
(0.6)
P 		163.6
(-0.1)
P 		106
(-3)
P 		198.9
(1.6)
P 		226
(3)
P 		190.4
(1.2)
P 		120
C 197.1
(3)
P 		159.4
(0.2)
P 		117.3
(-3)
P 		128.9
(-2.1)
P 		146.8
(-0.8)
P 		147
(-0.8)
P 		80
avr 154.6
(0.4) 		155.2
(0.5) 		111.9
(-3) 		154.7
(0.4) 		186.8
(3) 		143.1
(-0.5) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174891_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22071
Sequence Type Exemplar sequence
Representative Public ID CEK014FXR NCBI
Target Description CEK014FXR_rc /REP_DB=TREMBL Accession /GB=D27583 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077028 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-123) (tag-123) mRNA, complete cds. 11/11 None
F08F1.7 ENSEMBL cdna:known chromosome:CEL140:X:8418594:8421992:-1 gene:F08F1.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8418602-8418971(-) 91.6 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-123
Ensembl F08F1.7
Entrez Gene 181096 Entrez gene
SwissProt O17388 EMBL-EBI
WormBase CE09254 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250422_AT endomembrane protein 70, putative at
CANINE:1592929_S_AT similar to Transmembrane 9 superfamily protein member 2 precursor (p76) cfa
CANINE_2:CFA.2066.1.S1_AT similar to Transmembrane 9 superfamily protein member 2 precursor (p76) cfa
CANINE_2:CFA.20811.1.S1_S_AT similar to Transmembrane 9 superfamily protein member 2 precursor (p76) cfa
CANINE_2:CFAAFFX.9687.1.S1_S_AT similar to Transmembrane 9 superfamily protein member 2 precursor (p76) cfa
DROSOPHILA_2:1636977_AT dm
DROSGENOME1:155059_AT dm
CHICKEN:GGA.1704.1.S1_AT transmembrane 9 superfamily member 2 gga
HG-U133_PLUS_2:201078_AT transmembrane 9 superfamily member 2 hs
HG-U133A_2:201078_AT transmembrane 9 superfamily member 2 hs
HG-U133A:201078_AT transmembrane 9 superfamily member 2 hs
HG-FOCUS:201078_AT transmembrane 9 superfamily member 2 hs
HUGENEFL:U81006_AT transmembrane 9 superfamily member 2 hs
U133_X3P:G4758873_3P_AT transmembrane 9 superfamily member 2 hs
HG-U95AV2:34307_AT Transmembrane 9 superfamily member 2 hs
HG-U95C:66136_S_AT Transmembrane 9 superfamily member 2 hs
HG-U95C:59877_AT Transmembrane 9 superfamily member 2 hs
MOE430A:1423295_AT transmembrane 9 superfamily member 2 mm
MOUSE430_2:1423295_AT transmembrane 9 superfamily member 2 mm
MOUSE430A_2:1423295_AT transmembrane 9 superfamily member 2 mm
MOE430A:1460331_AT transmembrane 9 superfamily member 2 mm
MOUSE430A_2:1460331_AT transmembrane 9 superfamily member 2 mm
MOUSE430_2:1460331_AT transmembrane 9 superfamily member 2 mm
MU11KSUBA:C79895_RC_G_AT transmembrane 9 superfamily member 2 mm
MU11KSUBA:C79895_RC_AT transmembrane 9 superfamily member 2 mm
MU11KSUBB:MSA.32940.0_S_AT transmembrane 9 superfamily member 2 mm
MG-U74AV2:100572_AT transmembrane 9 superfamily member 2 mm
MG-U74BV2:163513_F_AT transmembrane 9 superfamily member 2 mm
MG-U74CV2:168813_R_AT transmembrane 9 superfamily member 2 mm
MG-U74CV2:170059_R_AT transmembrane 9 superfamily member 2 mm
MOE430A:1455875_X_AT transmembrane 9 superfamily member 2 mm
MOUSE430A_2:1455875_X_AT transmembrane 9 superfamily member 2 mm
MOUSE430_2:1455875_X_AT transmembrane 9 superfamily member 2 mm
MOE430B:1456742_X_AT transmembrane 9 superfamily member 2 mm
MOUSE430_2:1456742_X_AT transmembrane 9 superfamily member 2 mm
MU19KSUBB:TC33867_AT Transmembrane 9 superfamily member 2 (Tm9sf2), mRNA mm
MU19KSUBB:TC33867_G_AT Transmembrane 9 superfamily member 2 (Tm9sf2), mRNA mm
RG-U34C:RC_AI179901_AT transmembrane 9 superfamily member 2 rn
RAE230A:1367496_AT transmembrane 9 superfamily member 2 rn
RAE230B:1367496_AT transmembrane 9 superfamily member 2 rn
RAT230_2:1367496_AT transmembrane 9 superfamily member 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71307 Temporarily assigned gene name protein 123 [Caenorhabditis elegans] ref|NP_509429.1| Temporarily Assigned Gene name family member (tag-123) [Caenorhabditis elegans] 0.0
blast CAE74898 Hypothetical protein CBG22764 [Caenorhabditis briggsae] 0.0
blast AAH03862 Transmembrane 9 superfamily member 2 [Mus musculus] dbj|BAC40645.1| unnamed protein product [Mus musculus] dbj|BAC33215.1| unnamed protein product [Mus musculus] sp|P58021|TM9S2_MOUSE Transmembrane 9 superfamily protein member 2 precursor 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004240 EMBL-EBI Nonaspanin (TM9SF) 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509429.1 9 293-315,360-382,389-411,426-448,455-477,513-535,548-570,580-602,623-645
F08F1.7 9 293-315,360-382,389-411,426-448,455-477,513-535,548-570,580-602,623-645
Sequence
Target Sequence 
>C. ELEGANS:174891_S_AT
actattgcgtttgcattttccaccttttttatttctgatttgtttcctattttctctttt
catcttcggcatccttgtgatccggtaaaaccagtcatcatgatgagaaagtgaacaact
tatgggttgtatattgcaatgataatttattactattttgatttttaccagtctctccat
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTATTGCGTTTGCATTTTCCACCT 18 103 35 Antisense
GCATTTTCCACCTTTTTTATTTCTG 547 303 47 Antisense
TTCCACCTTTTTTATTTCTGATTTG 127 699 52 Antisense
ATTTCTGATTTGTTTCCTATTTTCT 399 17 65 Antisense
TGATTTGTTTCCTATTTTCTCTTTT 120 565 70 Antisense
TCATCTTCGGCATCCTTGTGATCCG 614 619 94 Antisense
GGCATCCTTGTGATCCGGTAAAACC 421 533 102 Antisense
GTGATCCGGTAAAACCAGTCATCAT 687 481 111 Antisense
AACTTATGGGTTGTATATTGCAATG 453 137 151 Antisense
TATTTTGATTTTTACCAGTCTCTCC 315 663 188 Antisense
TTGATTTTTACCAGTCTCTCCATCA 367 705 192 Antisense
Sequence Source Affymetrix Proprietary Database