[Home] | [Total List]

[174890_at]

Description CEK134C7R_rc /REP_DB=TREMBL Accession /GB=D65297 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 26      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 70      6grp_total > 25      4grp_total > 14      6grp_highest_sub > 01_02      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 462.6
(3)
P 		160
(-3)
P 		175.7
(-2.7)
P 		366.9
(1.1)
P 		303
B 243.8
(-1.1)
P 		204.8
(-2)
P 		155.5
(-3)
P 		440.8
(3)
P 		285
C 391.2
(0.7)
P 		187.2
(-3)
P 		231.1
(-2.2)
P 		516.7
(3)
P 		330
avr 365.9
(1.2) 		184
(-3) 		187.4
(-2.9) 		441.5
(3) 		258

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 313.9
(1.5)
P 		272.7
(-0.3)
P 		276.6
(-0.1)
P 		218.5
(-2.7)
P 		346.9
(3)
P 		211
(-3)
P 		136
B 431.6
(3)
P 		430.4
(3)
P 		370.9
(1.3)
P 		220.9
(-3)
P 		297.6
(-0.8)
P 		314.9
(-0.3)
P 		211
C 349.4
(1.4)
P 		396.4
(3)
P 		294.4
(-0.5)
P 		257
(-1.8)
P 		222.5
(-3)
P 		309.1
(-0)
P 		174
avr 365
(2.9) 		366.5
(3) 		314
(0.7) 		232.1
(-3) 		289
(-0.5) 		278.3
(-0.9) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 168.4
(3)
P 		34.7
(-3)
P 		45.9
(-2.5)
P 		53.7
(-2.1)
P 		134
B 77.7
(1.3)
P 		50.6
(-1.5)
P 		36
(-3)
P 		93.9
(3)
P 		58
C 129.5
(3)
P 		53.8
(-3)
P 		80.6
(-0.9)
P 		87.1
(-0.4)
P 		76
avr 125.2
(3) 		46.4
(-3) 		54.2
(-2.4) 		78.2
(-0.6) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 57.9
(-2.3)
P 		97
(2.1)
P 		60.2
(-2)
P 		55.4
(-2.5)
P 		104.7
(3)
P 		51.4
(-3)
P 		53
B 150.2
(3)
P 		143.3
(2.5)
P 		90.1
(-0.9)
P 		58.5
(-3)
P 		120.9
(1.1)
P 		117.4
(0.9)
P 		92
C 129.5
(3)
P 		121
(2.3)
P 		74.9
(-1.2)
P 		51.7
(-3)
P 		72
(-1.4)
P 		103.5
(1)
P 		78
avr 112.5
(2.3) 		120.4
(3) 		75.1
(-1.2) 		55.2
(-3) 		99.2
(1) 		90.8
(0.3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174890_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22072
Sequence Type Exemplar sequence
Representative Public ID CEK134C7R NCBI
Target Description CEK134C7R_rc /REP_DB=TREMBL Accession /GB=D65297 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077376 NCBI Caenorhabditis elegans related to oncogene ABL family member (abl-1) (abl-1) mRNA, complete cds. 11/11 None
M79.1b ENSEMBL cdna:known chromosome:CEL140:X:10605760:10624071:-1 gene:M79.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181261 3 1 NM_077376 174890_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10605779-10606099(-) 100.0 100.0
Public Domain and Genome References
Ensembl M79.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60296 Hypothetical protein M79.1b [Caenorhabditis elegans] ref|NP_509777.2| related to oncogene ABL family member (abl-1) [Caenorhabditis elegans] 0.0
blast CAA90691 Hypothetical protein M79.1a [Caenorhabditis elegans] ref|NP_509778.2| related to oncogene ABL family member (abl-1) [Caenorhabditis elegans] sp|P03949|ABL1_CAEEL Tyrosine-protein kinase abl-1 0.0
blast CAB60297 Hypothetical protein M79.1c [Caenorhabditis elegans] ref|NP_509779.2| related to oncogene ABL family member (abl-1) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-16
hanks 2.1.14 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; MLCK-K 4.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 1.7E-45
Pfam IPR001452 EMBL-EBI SH3 8.7E-16
Pfam IPR000719 EMBL-EBI Protein kinase 2.7E-96
Sequence
Target Sequence 
>C. ELEGANS:174890_AT
tttcttccaaaacaccataatatcttttccgattccttttttattttgaatctgcagctg
aaacatcaagtaggtactactgaataaaacgtgtagtttgtcttccatctaccatttctg
atgagattattcgtcttcttcaatttttttttttcctgtcattatttttcattgcacact
gagtgcaactaaacggtgtaccgtcttctttccttttatcattaatttttgactgttatg
tgaacctttctcactttttctgtttttcttttcatgttcactctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTTCCAAAACACCATAATATCT 674 657 15 Antisense
CATAATATCTTTTCCGATTCCTTTT 481 213 30 Antisense
GAATCTGCAGCTGAAACATCAAGTA 123 329 62 Antisense
AAACGTGTAGTTTGTCTTCCATCTA 143 127 101 Antisense
GTCTTCCATCTACCATTTCTGATGA 288 469 114 Antisense
GATGAGATTATTCGTCTTCTTCAAT 515 411 134 Antisense
TTTTTTTCCTGTCATTATTTTTCAT 408 675 162 Antisense
TGAGTGCAACTAAACGGTGTACCGT 268 563 194 Antisense
GTCTTCTTTCCTTTTATCATTAATT 62 469 217 Antisense
ATGTGAACCTTTCTCACTTTTTCTG 352 49 252 Antisense
GTTTTTCTTTTCATGTTCACTCTAG 481 449 276 Antisense
Sequence Source Affymetrix Proprietary Database