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[174889_s_at]

Description CEK127C9R_rc /REP_DB=TREMBL Accession /GB=D64897 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk127c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 98      6grp_total > 77      4grp_total > 59      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 872
1 2 3 4 range
A 754.3
(0.8)
P 		772
(1)
P 		972.6
(3)
P 		371.4
(-3)
P 		601
B 766.9
(0.2)
P 		900.5
(1.3)
P 		1124
(3)
P 		345.2
(-3)
P 		779
C 743.8
(0.5)
P 		855.8
(1.2)
P 		1104.7
(3)
P 		252.2
(-3)
P 		853
avr 755
(0.5) 		842.8
(1.2) 		1067.1
(3) 		322.9
(-3) 		744

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1562
1 2 3 4 5 6 range
A 688.6
(-2)
P 		818
(-1.4)
P 		464.9
(-3)
P 		692.2
(-2)
P 		1070.9
(-0.2)
P 		1769.6
(3)
P 		1305
B 697.9
(-1.9)
P 		739.8
(-1.6)
P 		524.1
(-3)
P 		850.4
(-1)
P 		855.9
(-0.9)
P 		1481.8
(3)
P 		958
C 648.8
(-3)
P 		838.4
(-2.2)
P 		688.7
(-2.8)
P 		757.6
(-2.5)
P 		808.5
(-2.3)
P 		2027
(3)
P 		1378
avr 678.4
(-2.4) 		798.7
(-1.8) 		559.2
(-3) 		766.7
(-2) 		911.8
(-1.2) 		1759.5
(3) 		1200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 274.6
(3)
P 		167.6
(0.1)
P 		254.3
(2.4)
P 		54.4
(-3)
P 		220
B 244.6
(2.5)
P 		222.4
(1.8)
P 		260.5
(3)
P 		73.6
(-3)
P 		187
C 246.2
(0.6)
P 		246.1
(0.6)
P 		385
(3)
P 		42.5
(-3)
P 		343
avr 255.1
(1.9) 		212
(0.8) 		299.9
(3) 		56.8
(-3) 		243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 577
1 2 3 4 5 6 range
A 126.9
(-2.5)
P 		290.9
(0.5)
P 		101.2
(-3)
P 		175.5
(-1.6)
P 		323.2
(1)
P 		430.8
(3)
P 		330
B 242.9
(-1.4)
P 		246.2
(-1.3)
P 		127.3
(-3)
P 		225.3
(-1.6)
P 		347.7
(0.1)
P 		552.6
(3)
P 		425
C 240.5
(-2)
P 		255.8
(-1.8)
P 		175.3
(-2.7)
P 		152.4
(-3)
P 		261.6
(-1.8)
P 		678.6
(3)
P 		526
avr 203.4
(-2) 		264.3
(-1.1) 		134.6
(-3) 		184.4
(-2.3) 		310.8
(-0.5) 		554
(3) 		419
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174889_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21144
Sequence Type Exemplar sequence
Representative Public ID CEK127C9R NCBI
Target Description CEK127C9R_rc /REP_DB=TREMBL Accession /GB=D64897 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk127c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066410
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C02F5.1 ENSEMBL cdna:known chromosome:CEL140:III:8250552:8254238:1 gene:C02F5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8253775-8254158(+) 100.0 100.0
Public Domain and Genome References
Ensembl C02F5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27916 Kinetochore null protein 1 [Caenorhabditis elegans] ref|NP_498811.1| Kinetochore NuLl family member (knl-1) [Caenorhabditis elegans] sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromosome III 0.0
blast S44798 F09G8.5 protein - Caenorhabditis elegans 0.0
blast S44603 C02F5.1 protein - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:174889_S_AT
ccttgcatcaggcctacaatacttctgatgctcatataattctttacctaatgtgccata
tattttagtttttttttcatctaaaaatacccattgtgcatcaaccgcacttgctgtatt
tccttcaagatgtttaccttttcccctatacatttatgcctcagagcaatcacaaagtta
tgtttttattcctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTGCATCAGGCCTACAATACTTC 142 269 110 Antisense
CAGGCCTACAATACTTCTGATGCTC 378 209 118 Antisense
TTACCTAATGTGCCATATATTTTAG 121 681 153 Antisense
AAAATACCCATTGTGCATCAACCGC 192 133 193 Antisense
CCCATTGTGCATCAACCGCACTTGC 15 257 199 Antisense
ATCAACCGCACTTGCTGTATTTCCT 174 27 209 Antisense
GCACTTGCTGTATTTCCTTCAAGAT 232 317 216 Antisense
TTTTCCCCTATACATTTATGCCTCA 385 677 248 Antisense
CCCCTATACATTTATGCCTCAGAGC 145 261 252 Antisense
GCCTCAGAGCAATCACAAAGTTATG 542 281 267 Antisense
CACAAAGTTATGTTTTTATTCCTAG 52 193 280 Antisense
Sequence Source Affymetrix Proprietary Database