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[174887_at]

Description CEK014EZR_rc /REP_DB=TREMBL Accession /GB=D27578 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14e12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 36      4grp_high_8_8 > 08      6grp_highest_nonorm > 81      6grp_total > 95      4grp_total > 15      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 235.8
(3)
P 		137.9
(-3)
P 		179.4
(-0.5)
P 		162.6
(-1.5)
P 		98
B 212.3
(3)
P 		76.2
(-3)
P 		119.6
(-1.1)
P 		206.7
(2.8)
P 		136
C 246.5
(3)
P 		138.2
(-3)
P 		188.8
(-0.2)
P 		210.4
(1)
P 		108
avr 231.5
(3) 		117.4
(-3) 		162.6
(-0.6) 		193.2
(1) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 212.7
(-1.7)
P 		181.7
(-3)
P 		275.8
(0.9)
P 		235.6
(-0.8)
P 		328.3
(3)
P 		268.8
(0.6)
P 		147
B 291.5
(-0.2)
P 		264.7
(-1.6)
P 		237.9
(-3)
P 		251.4
(-2.3)
P 		296.9
(0.1)
P 		351.1
(3)
P 		113
C 218.7
(-3)
P 		259.2
(-1.4)
P 		218.5
(-3)
P 		367.1
(3)
P 		252.9
(-1.6)
P 		251.8
(-1.7)
P 		149
avr 241
(-2.4) 		235.2
(-3) 		244.1
(-2.1) 		284.7
(2.2) 		292.7
(3) 		290.6
(2.8) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 85.9
(3)
P 		29.9
(-2.4)
P 		46.9
(-0.8)
P 		23.8
(-3)
P 		62
B 67.7
(3)
P 		18.8
(-3)
P 		27.7
(-1.9)
P 		44.1
(0.1)
P 		49
C 81.6
(3)
P 		39.7
(-2.5)
P 		65.8
(0.9)
P 		35.5
(-3)
P 		46
avr 78.4
(3) 		29.5
(-3) 		46.8
(-0.9) 		34.5
(-2.4) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 39.2
(-3)
P 		64.6
(-0.5)
P 		60.1
(-0.9)
P 		59.7
(-0.9)
P 		99.1
(3)
P 		65.4
(-0.4)
P 		60
B 101.4
(0.6)
P 		88.1
(-0.5)
P 		57.8
(-3)
P 		66.6
(-2.3)
P 		120.6
(2.2)
P 		130.9
(3)
P 		73
C 81
(2.3)
P 		79.1
(1.9)
P 		55.6
(-3)
P 		73.8
(0.8)
P 		81.8
(2.5)
P 		84.3
(3)
P 		29
avr 73.9
(-0.7) 		77.3
(-0.3) 		57.8
(-3) 		66.7
(-1.7) 		100.5
(3) 		93.5
(2) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21406
Sequence Type Exemplar sequence
Representative Public ID CEK014EZR NCBI
Target Description CEK014EZR_rc /REP_DB=TREMBL Accession /GB=D27578 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027947 NCBI Caenorhabditis elegans human DICE1 (Deleted In Cancer) homolog family member (dic-1) (dic-1) mRNA, complete cds. 11/11 None
F08B4.1b ENSEMBL cdna:known chromosome:CEL140:IV:8692081:8696425:1 gene:F08B4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027946 2/11 Cross Hyb Matching Probes None
SNAP00000025371 2/11 Cross Hyb Matching Probes None
GENEFINDER00000025382 2/11 Cross Hyb Matching Probes None
F08B4.1a 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177676 2 1 NM_001027947 174887_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8696042-8696421(+) 84.43 100.0
Public Domain and Genome References
Ensembl F08B4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05577 Human dice1 (deleted in cancer) homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_001023118.1| human DICE1 (Deleted In Cancer) homolog family member (dic-1) [Caenorhabditis elegans] 0.0
blast AAB37727 Human dice1 (deleted in cancer) homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_001023117.1| human DICE1 (Deleted In Cancer) homolog family member (dic-1) [Caenorhabditis elegans] 0.0
blast CAE72478 Hypothetical protein CBG19654 [Caenorhabditis briggsae] 1.0E-127
Sequence
Target Sequence 
>C. ELEGANS:174887_AT
aatatgccctacgagaatctcaacgattcaaattgaaacaactcactgaacgtctcgaaa
atcgactgaaaactgtttgattttttttgtaattttttgatgacgaagcgatgttttggt
gattttttgtgatgttatgcatcttaaattgtttttttaattattatttttcctttgagt
attcctattgaaaattaaatccctctgaaatttaactgaaaacatcttgatcgtttttta
acttctctttctaggtgctctttcaaaacttttgtgatttttgccccattatccatttct
ttcttttttcatcaccccagtttgttttattcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATGCCCTACGAGAATCTCAACG 411 171 13 Antisense
TGAAACAACTCACTGAACGTCTCGA 343 573 46 Antisense
GATGACGAAGCGATGTTTTGGTGAT 705 409 111 Antisense
GATGTTTTGGTGATTTTTTGTGATG 56 411 122 Antisense
ATTTTTCCTTTGAGTATTCCTATTG 614 13 178 Antisense
CATCTTGATCGTTTTTTAACTTCTC 199 213 235 Antisense
TTAACTTCTCTTTCTAGGTGCTCTT 473 683 250 Antisense
GGTGCTCTTTCAAAACTTTTGTGAT 486 501 266 Antisense
TTGTGATTTTTGCCCCATTATCCAT 137 709 284 Antisense
TTTTCATCACCCCAGTTTGTTTTAT 68 677 318 Antisense
ATCACCCCAGTTTGTTTTATTCGAG 575 25 323 Antisense
Sequence Source Affymetrix Proprietary Database