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[174886_at]

Description CEK082HYR_rc /REP_DB=TREMBL Accession /GB=D71865 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk82h11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 80      6grp_total > 16      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 741
1 2 3 4 range
A 501.4
(3)
P 		93.5
(-2.7)
P 		74.2
(-3)
P 		476.3
(2.6)
P 		427
B 226.8
(-1.8)
P 		125.9
(-2.6)
P 		79.2
(-3)
P 		814.8
(3)
P 		736
C 409
(-0.6)
P 		165.6
(-3)
P 		171.5
(-2.9)
P 		765.8
(3)
P 		600
avr 379.1
(-0.2) 		128.3
(-2.8) 		108.3
(-3) 		685.6
(3) 		577

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 288.2
(3)
P 		221.4
(0.8)
P 		174.9
(-0.7)
P 		102.2
(-3)
P 		184.4
(-0.3)
P 		141.2
(-1.7)
P 		186
B 361.1
(3)
P 		268.8
(0.5)
P 		199.5
(-1.4)
P 		169.2
(-2.2)
P 		141.7
(-3)
P 		154.4
(-2.7)
P 		219
C 340.2
(3)
P 		226.6
(0.2)
P 		170.3
(-1.2)
P 		99.3
(-3)
P 		148.7
(-1.8)
P 		143.8
(-1.9)
P 		241
avr 329.8
(3) 		238.9
(0.4) 		181.6
(-1.3) 		123.6
(-3) 		158.3
(-2) 		146.5
(-2.3) 		206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 182.6
(3)
P 		20.3
(-3)
P 		19.4
(-3)
P 		69.7
(-1.2)
P 		163
B 72.3
(-0.9)
P 		31.1
(-2.5)
P 		18.4
(-3)
P 		173.6
(3)
P 		155
C 135.4
(3)
P 		47.6
(-3)
P 		59.8
(-2.2)
P 		129.1
(2.6)
P 		88
avr 130.1
(3) 		33
(-3) 		32.5
(-3) 		124.1
(2.6) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 53.1
(0.1)
P 		78.7
(3)
P 		38.1
(-1.6)
P 		25.9
(-3)
P 		55.7
(0.4)
P 		34.4
(-2)
P 		53
B 125.6
(3)
P 		89.5
(0.3)
P 		48.5
(-2.7)
P 		44.8
(-3)
P 		57.6
(-2)
P 		57.6
(-2)
P 		81
C 126.1
(3)
P 		69.1
(-0.2)
P 		43.3
(-1.7)
P 		20
(-3)
P 		48.1
(-1.4)
P 		48.1
(-1.4)
P 		106
avr 101.6
(3) 		79.1
(1.1) 		43.3
(-1.9) 		30.2
(-3) 		53.8
(-1) 		46.7
(-1.6) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22257
Sequence Type Exemplar sequence
Representative Public ID CEK082HYR NCBI
Target Description CEK082HYR_rc /REP_DB=TREMBL Accession /GB=D71865 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk82h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C07A12.1a ENSEMBL cdna:known chromosome:CEL140:X:4554530:4559358:1 gene:C07A12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4559039-4559349(+) 100.0 100.0
Public Domain and Genome References
Ensembl C07A12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39155 Hsn abnormal migration protein 2, isoform a [Caenorhabditis elegans] ref|NP_001024363.1| HSN Abnormal Migration family member (ham-2) [Caenorhabditis elegans] 0.0
blast AAQ65209 Hsn abnormal migration protein 2, isoform b [Caenorhabditis elegans] ref|NP_001024364.1| HSN Abnormal Migration family member (ham-2) [Caenorhabditis elegans] 0.0
blast T34095 zinc finger protein ham-2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.8E-5
Sequence
Target Sequence 
>C. ELEGANS:174886_AT
aaatcagagtgctctcattcctgacaattgtatttaccgcaatcttagaaactggtggac
attttccaaacaatccgaatctactttacttttttgttgcaatagcttcaataaaacgta
gccttaaatgcactcagcgatttacctagaacgtcctttacattacttcattgttctaaa
tgtttccttttttatttcttctggtccttttcttgacttttatagcattacccttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCAGAGTGCTCTCATTCCTGAC 621 117 41 Antisense
GCTCTCATTCCTGACAATTGTATTT 672 299 51 Antisense
GTATTTACCGCAATCTTAGAAACTG 649 449 70 Antisense
GGACATTTTCCAAACAATCCGAATC 475 525 97 Antisense
GAATCTACTTTACTTTTTTGTTGCA 131 327 117 Antisense
ACGTAGCCTTAAATGCACTCAGCGA 654 55 156 Antisense
TCAGCGATTTACCTAGAACGTCCTT 671 607 174 Antisense
GAACGTCCTTTACATTACTTCATTG 51 349 189 Antisense
ACTTCATTGTTCTAAATGTTTCCTT 562 103 205 Antisense
TCTGGTCCTTTTCTTGACTTTTATA 222 607 240 Antisense
TGACTTTTATAGCATTACCCTTTTT 29 565 254 Antisense
Sequence Source Affymetrix Proprietary Database