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[174885_at]

Description CEK134F5R_rc /REP_DB=TREMBL Accession /GB=D65322 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134f5 : 3prime end, single read.
Cluster 6grp_total > 11      4grp_total > 54      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 75.1
(0.1)
A 		106.5
(3)
A 		53
(-1.9)
A 		40.9
(-3)
A 		66
B 113.6
(1.1)
A 		85.8
(-3)
A 		126.3
(3)
A 		106.7
(0.1)
A 		41
C 80.2
(3)
A 		27
(-2.6)
A 		23.2
(-3)
A 		33.7
(-1.9)
A 		57
avr 89.6
(3) 		73.1
(-0.4) 		67.5
(-1.5) 		60.4
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 23.9
(-1.6)
A 		56.2
(1.5)
A 		72.1
(3)
A 		8.9
(-3)
A 		16.2
(-2.3)
A 		18.3
(-2.1)
A 		63
B 110.9
(1.5)
A 		144.4
(3)
A 		137.4
(2.7)
A 		61.7
(-0.7)
A 		90.2
(0.6)
A 		11.5
(-3)
A 		133
C 42.8
(-2.2)
A 		188.5
(3)
A 		27.2
(-2.8)
A 		21
(-3)
A 		42.2
(-2.2)
A 		71.4
(-1.2)
A 		168
avr 59.2
(-1.3) 		129.7
(3) 		78.9
(-0.1) 		30.5
(-3) 		49.5
(-1.9) 		33.7
(-2.8) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 27.3
(3)
A 		23.1
(1.8)
A 		13.8
(-0.8)
A 		6
(-3)
A 		21
B 36.2
(3)
A 		21.2
(-3)
A 		29.3
(0.2)
A 		22.7
(-2.4)
A 		15
C 26.6
(3)
A 		7.8
(-2.4)
A 		8.1
(-2.3)
A 		5.7
(-3)
A 		21
avr 30
(3) 		17.4
(-1.1) 		17.1
(-1.2) 		11.5
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 4.4
(-2.3)
A 		20
(3)
A 		15.7
(1.5)
A 		2.3
(-3)
A 		4.9
(-2.1)
A 		4.4
(-2.3)
A 		18
B 38.6
(1.7)
A 		48.1
(3)
A 		33.4
(1)
A 		16.3
(-1.4)
A 		36.6
(1.4)
A 		4.3
(-3)
A 		44
C 15.9
(-1.7)
A 		57.5
(3)
A 		6.9
(-2.7)
A 		4.2
(-3)
A 		13.7
(-1.9)
A 		23.9
(-0.8)
A 		53
avr 19.6
(-0.9) 		41.9
(3) 		18.7
(-1.1) 		7.6
(-3) 		18.4
(-1.1) 		10.9
(-2.4) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174885_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22371
Sequence Type Exemplar sequence
Representative Public ID CEK134F5R NCBI
Target Description CEK134F5R_rc /REP_DB=TREMBL Accession /GB=D65322 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK134F5R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK134F5R CEK134F5R_rc /REP_DB=TREMBL Accession /GB=D65322 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134f5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078132 11/11 Negative Strand Matching Probes A 
NM_001029498 11/11 Negative Strand Matching Probes None
NM_001029499 11/11 Negative Strand Matching Probes None
SNAP00000014644 11/11 Negative Strand Matching Probes None
GENEFINDER00000014645 11/11 Negative Strand Matching Probes None
F46F2.2c 11/11 Negative Strand Matching Probes None
F46F2.2a 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15273362-15273664(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174885_AT
gaaaattatggagcagccgtggctgatggtgttctccgtgtgcttgcgccatcaacagag
ggtgcctattcatttcctctggcccgctgccagatggtaataatagggcctctgggccac
cgatcaccgccgtttcaccgggattatgactgttcgtggctggttcggtggtgtccatcg
gtgtgctcgtgttgttgtgccaggttgctgcagcggcggcatcatttgacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATTATGGAGCAGCCGTGGCTG 444 351 19 Antisense
AGCAGCCGTGGCTGATGGTGTTCTC 493 77 30 Antisense
TGCTTGCGCCATCAACAGAGGGTGC 482 579 59 Antisense
AGAGGGTGCCTATTCATTTCCTCTG 50 67 75 Antisense
CTCTGGCCCGCTGCCAGATGGTAAT 53 233 95 Antisense
GGCCCGCTGCCAGATGGTAATAATA 21 543 99 Antisense
ATAATAGGGCCTCTGGGCCACCGAT 335 25 118 Antisense
CCGCCGTTTCACCGGGATTATGACT 246 263 145 Antisense
ACCGGGATTATGACTGTTCGTGGCT 312 87 155 Antisense
TTATGACTGTTCGTGGCTGGTTCGG 455 679 162 Antisense
CTGCAGCGGCGGCATCATTTGACAT 344 237 226 Antisense
Sequence Source Affymetrix Proprietary Database