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[174884_at]

Description CEK034CYR_rc /REP_DB=TREMBL Accession /GB=D33662 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34c11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 50      6grp_total > 28      4grp_total > 54      6grp_cgc > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 588.1
(3)
P 		254.5
(-2)
P 		364
(-0.3)
P 		184.6
(-3)
P 		404
B 464.6
(3)
P 		340.8
(-0.3)
P 		284.1
(-1.8)
P 		238.5
(-3)
P 		226
C 495.2
(3)
P 		340
(-0.7)
P 		386.7
(0.4)
P 		245.2
(-3)
P 		250
avr 516
(3) 		311.8
(-1.2) 		344.9
(-0.5) 		222.8
(-3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 524.1
(3)
P 		475.9
(1.6)
P 		310
(-3)
P 		321.1
(-2.7)
P 		457.2
(1.1)
P 		371.5
(-1.3)
P 		214
B 643.2
(3)
P 		627.5
(2.7)
P 		383.6
(-2.7)
P 		368.7
(-3)
P 		467.7
(-0.8)
P 		489.5
(-0.4)
P 		275
C 754.5
(3)
P 		533.5
(0)
P 		307.8
(-3)
P 		408.1
(-1.7)
P 		521.9
(-0.1)
P 		321.4
(-2.8)
P 		447
avr 640.6
(3) 		545.6
(1.1) 		333.8
(-3) 		366
(-2.4) 		482.3
(-0.1) 		394.1
(-1.8) 		307
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 214.1
(3)
P 		55.2
(-2.1)
P 		95.2
(-0.8)
P 		27
(-3)
P 		187
B 148.2
(3)
P 		84.2
(-0.9)
P 		65.8
(-2.1)
P 		50.8
(-3)
P 		97
C 163.9
(3)
P 		97.8
(-0.2)
P 		134.8
(1.6)
P 		41.3
(-3)
P 		123
avr 175.4
(3) 		79.1
(-1.3) 		98.6
(-0.4) 		39.7
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 96.6
(-1.3)
P 		169.3
(3)
P 		67.5
(-3)
P 		81.4
(-2.2)
P 		138
(1.2)
P 		90.4
(-1.7)
P 		102
B 223.8
(3)
P 		208.9
(2.3)
P 		93.2
(-3)
P 		97.7
(-2.8)
P 		190
(1.4)
P 		182.5
(1.1)
P 		131
C 279.7
(3)
P 		162.8
(-0.5)
P 		78.3
(-3)
P 		82.1
(-2.9)
P 		168.9
(-0.3)
P 		107.6
(-2.1)
P 		201
avr 200
(3) 		180.3
(2) 		79.7
(-3) 		87.1
(-2.6) 		165.6
(1.3) 		126.8
(-0.7) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21120
Sequence Type Exemplar sequence
Representative Public ID CEK034CYR NCBI
Target Description CEK034CYR_rc /REP_DB=TREMBL Accession /GB=D33662 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027723 NCBI Caenorhabditis elegans Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-1) (tat-1) mRNA, complete cds. 11/11 None
Y49E10.11a ENSEMBL cdna:known chromosome:CEL140:III:12398799:12420539:-1 gene:Y49E10.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176666 2 1 NM_001027723 174884_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12398822-12399170(-) 97.41 100.0
Public Domain and Genome References
Ensembl Y49E10.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB11550 Hypothetical protein Y49E10.11a [Caenorhabditis elegans] ref|NP_001022894.1| Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-1) [Caenorhabditis elegans] 0.0
blast CAE54923 Hypothetical protein Y49E10.11b [Caenorhabditis elegans] ref|NP_001022895.1| Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-1) [Caenorhabditis elegans] 0.0
blast CAE66475 Hypothetical protein CBG11754 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A8A1_HUMAN (Q9Y2Q0) Potential phospholipid-transporting ATPase IA (EC 3.6.3.1) (Chromaffin granule ATPase II) (ATPase class I type 8A member 1) 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022894.1 8 276-298,318-340,823-845,855-877,898-920,935-957,970-992,1007-1029
Y49E10.11a 8 276-298,318-340,823-845,855-877,898-920,935-957,970-992,1007-1029
Sequence
Target Sequence 
>C. ELEGANS:174884_AT
aagacgagtagatttgactgtttacagagactacggtagcgaaattattacaacgatata
tattttctctccaaaattgtattgccaaaattctttttcctgatcttttcctttttagtg
agagtgacattttatcgattttcccctcccccccaaataacttctgccgatgaacatgtt
acgggcagtgagagagagagagagatattatactgtatttttataagaaatgttcgtttt
gctcaatttcctgtacactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACGAGTAGATTTGACTGTTTAC 688 151 71 Antisense
GACTGTTTACAGAGACTACGGTAGC 499 375 86 Antisense
ACAACGATATATATTTTCTCTCCAA 164 113 120 Antisense
TTTCTCTCCAAAATTGTATTGCCAA 9 673 134 Antisense
GTATTGCCAAAATTCTTTTTCCTGA 572 451 149 Antisense
TTTCCTGATCTTTTCCTTTTTAGTG 73 669 166 Antisense
TGAGAGTGACATTTTATCGATTTTC 574 567 189 Antisense
CCCCCAAATAACTTCTGCCGATGAA 114 259 220 Antisense
GATGAACATGTTACGGGCAGTGAGA 209 413 239 Antisense
AATGTTCGTTTTGCTCAATTTCCTG 208 165 299 Antisense
GTTTTGCTCAATTTCCTGTACACTT 559 447 306 Antisense
Sequence Source Affymetrix Proprietary Database