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[174882_s_at] Isopentenyl-diphosphate delta isomerase

Description CEK039FZR_rc /REP_DB=TREMBL Accession /GB=D34011 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39f12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 45      4grp_high_8_8 > 08      6grp_highest_nonorm > 73      6grp_total > 35      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 573
1 2 3 4 range
A 838.7
(3)
P 		298.6
(-3)
P 		427.1
(-1.6)
P 		655.4
(1)
P 		540
B 871.4
(3)
P 		357.7
(-3)
P 		369.7
(-2.9)
P 		675.7
(0.7)
P 		514
C 753.3
(3)
P 		409.3
(-3)
P 		443.1
(-2.4)
P 		689.7
(1.9)
P 		344
avr 821.1
(3) 		355.2
(-3) 		413.3
(-2.3) 		673.6
(1.1) 		466

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 623.2
(3)
P 		618.7
(2.9)
P 		593.5
(2.1)
P 		499.9
(-0.5)
P 		414.6
(-3)
P 		494.9
(-0.7)
P 		209
B 641.9
(3)
P 		569.3
(0)
P 		510.5
(-2.4)
P 		516
(-2.2)
P 		496.1
(-3)
P 		586.1
(0.7)
P 		146
C 545.6
(0.4)
P 		618.2
(2.3)
P 		624.4
(2.4)
P 		571.7
(1.1)
P 		415.2
(-3)
P 		646
(3)
P 		231
avr 603.6
(3) 		602.1
(2.9) 		576.1
(2) 		529.2
(0.2) 		442
(-3) 		575.7
(2) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 305.4
(3)
P 		64.8
(-3)
P 		111.6
(-1.8)
P 		95.9
(-2.2)
P 		241
B 277.9
(3)
P 		88.4
(-2.9)
P 		85.7
(-3)
P 		144
(-1.2)
P 		192
C 249.4
(3)
P 		117.7
(-2.9)
P 		154.4
(-1.3)
P 		116.3
(-3)
P 		133
avr 277.6
(3) 		90.3
(-3) 		117.2
(-2.1) 		118.7
(-2.1) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 114.9
(-3)
P 		220
(3)
P 		129.3
(-2.2)
P 		126.8
(-2.3)
P 		125.1
(-2.4)
P 		120.5
(-2.7)
P 		105
B 223.3
(3)
P 		189.5
(1)
P 		124
(-3)
P 		136.7
(-2.2)
P 		201.6
(1.7)
P 		218.6
(2.7)
P 		99
C 202.2
(2.2)
P 		188.6
(1.4)
P 		158.9
(-0.4)
P 		115
(-3)
P 		134.3
(-1.9)
P 		216.2
(3)
P 		101
avr 180.1
(1.4) 		199.4
(3) 		137.4
(-2.1) 		126.2
(-3) 		153.7
(-0.7) 		185.1
(1.8) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174882_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21015
Sequence Type Exemplar sequence
Representative Public ID CEK039FZR NCBI
Target Description CEK039FZR_rc /REP_DB=TREMBL Accession /GB=D34011 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39f12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066364 NCBI Caenorhabditis elegans K06H7.3 (K06H7.3) mRNA, complete cds. 11/11 None
SNAP00000036732 ENSEMBL cdna:SNAP chromosome:CEL140:III:8088461:8091394:1 11/11 None
GENEFINDER00000036742 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8088461:8091394:1 11/11 None
K06H7.3.3 ENSEMBL cdna:known chromosome:CEL140:III:8088403:8091506:1 gene:K06H7.3 11/11 None
K06H7.3.2 ENSEMBL cdna:known chromosome:CEL140:III:8088456:8091506:1 gene:K06H7.3 11/11 None
K06H7.3.1 ENSEMBL cdna:known chromosome:CEL140:III:8088460:8091507:1 gene:K06H7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8091007-8091495(+) 100.0 100.0
Public Domain and Genome References
Gene Title Isopentenyl-diphosphate delta isomerase
Ensembl K06H7.3
Entrez Gene 176141 Entrez gene
SwissProt P34511 EMBL-EBI
WormBase CE26941 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99988 Hypothetical protein K06H7.3 [Caenorhabditis elegans] ref|NP_498765.1| K06H7.3 [Caenorhabditis elegans] sp|P34511|YMX3_CAEEL Hypothetical protein K06H7.3 in chromosome III 0.0
blast CAE75056 Hypothetical protein CBG22970 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174882_S_AT
tagctgttgatagacgacttgctggtcttccaccaatccttcgatgtcatcagtgcggcg
ttcaacttcctccaactccattccaatattctcactacaacttctgctcgacttcttgtg
tagccgagcatcggaaggccaatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCTGTTGATAGACGACTTGCTGG 492 649 105 Antisense
GATAGACGACTTGCTGGTCTTCCAC 413 425 113 Antisense
CACCAATCCTTCGATGTCATCAGTG 119 203 135 Antisense
CCTTCGATGTCATCAGTGCGGCGTT 131 269 142 Antisense
TCCAACTCCATTCCAATATTCTCAC 692 587 175 Antisense
CTCCATTCCAATATTCTCACTACAA 701 235 180 Antisense
ATTCCAATATTCTCACTACAACTTC 500 7 184 Antisense
AATATTCTCACTACAACTTCTGCTC 74 175 189 Antisense
TCTGCTCGACTTCTTGTGTAGCCGA 461 609 207 Antisense
ACTTCTTGTGTAGCCGAGCATCGGA 598 103 215 Antisense
AGCCGAGCATCGGAAGGCCAATCCT 419 81 226 Antisense
Sequence Source Affymetrix Proprietary Database