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[174881_s_at]

Description CEK128D6R_rc /REP_DB=TREMBL Accession /GB=D64950 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk128d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 29      4grp_highest_8_8 > 43      4grp_high_8_8 > 40      6grp_highest_nonorm > 80      6grp_total > 34      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 281.6
(3)
P 		150.4
(-2.8)
P 		145
(-3)
P 		151
(-2.7)
P 		137
B 224.7
(3)
P 		192.3
(-0.2)
P 		163.1
(-3)
P 		163.3
(-3)
P 		62
C 298.7
(3)
P 		112.4
(-3)
P 		222.6
(0.5)
P 		152.8
(-1.7)
P 		186
avr 268.3
(3) 		151.7
(-3) 		176.9
(-1.7) 		155.7
(-2.8) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 195.4
(-0.8)
P 		225.4
(0.9)
P 		260.9
(3)
P 		185.5
(-1.4)
P 		158.2
(-3)
P 		187.3
(-1.3)
P 		103
B 293.4
(3)
P 		233.4
(-0.5)
P 		229.8
(-0.7)
P 		191
(-3)
P 		248.2
(0.4)
P 		269.7
(1.6)
P 		102
C 263
(3)
P 		248.3
(2)
P 		215.6
(-0.1)
P 		172.5
(-3)
P 		262
(2.9)
P 		224.9
(0.5)
P 		91
avr 250.6
(3) 		235.7
(1.7) 		235.4
(1.7) 		183
(-3) 		222.8
(0.5) 		227.3
(0.9) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 102.5
(3)
P 		32.6
(-2.2)
P 		37.9
(-1.8)
P 		22.1
(-3)
P 		80
B 71.7
(3)
P 		47.5
(-0.9)
P 		37.8
(-2.5)
P 		34.8
(-3)
P 		37
C 98.9
(3)
P 		32.3
(-2.5)
P 		77.6
(1.3)
P 		25.8
(-3)
P 		73
avr 91
(3) 		37.5
(-2.1) 		51.1
(-0.8) 		27.6
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 36
(-3)
P 		80.2
(3)
P 		56.8
(-0.2)
P 		47
(-1.5)
P 		47.7
(-1.4)
P 		45.6
(-1.7)
P 		44
B 102.1
(3)
P 		77.7
(0.2)
P 		55.8
(-2.4)
P 		50.6
(-3)
P 		100.8
(2.8)
P 		100.6
(2.8)
P 		52
C 97.5
(3)
P 		75.8
(0.9)
P 		54.9
(-1.1)
P 		34.7
(-3)
P 		84.8
(1.8)
P 		75.3
(0.9)
P 		63
avr 78.5
(3) 		77.9
(2.9) 		55.8
(-1) 		44.1
(-3) 		77.8
(2.9) 		73.8
(2.2) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174881_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21883
Sequence Type Exemplar sequence
Representative Public ID CEK128D6R NCBI
Target Description CEK128D6R_rc /REP_DB=TREMBL Accession /GB=D64950 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk128d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073648(11), NM_073647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073648 NCBI Caenorhabditis elegans C27A7.5a (asparaginase) mRNA, complete cds. 11/11 A 
NM_073647 NCBI Caenorhabditis elegans C27A7.5c (asparaginase) mRNA, complete cds. 11/11 A 
SNAP00000042926 ENSEMBL cdna:SNAP chromosome:CEL140:V:12157615:12160932:-1 11/11 None
GENEFINDER00000042934 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12157615:12160932:-1 11/11 None
C27A7.5a ENSEMBL cdna:known chromosome:CEL140:V:12157465:12164887:-1 gene:C27A7.5 11/11 A 
C27A7.5c ENSEMBL cdna:known chromosome:CEL140:V:12157615:12164886:-1 gene:C27A7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179667 3 2 NM_073647 174881_s_at (11), 191174_s_at (11)
NM_073648 174881_s_at (11), 191174_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12157557-12157939(-) 100.0 100.0
Public Domain and Genome References
Ensembl C27A7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02791 Hypothetical protein C27A7.5a [Caenorhabditis elegans] ref|NP_506049.1| C27A7.5a [Caenorhabditis elegans] 0.0
blast CAB02790 Hypothetical protein C27A7.5c [Caenorhabditis elegans] ref|NP_506048.1| C27A7.5c [Caenorhabditis elegans] 0.0
blast CAE75404 Hypothetical protein CBG23394 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006034 EMBL-EBI Asparaginase/glutaminase 7.7E-55
Pfam IPR002110 EMBL-EBI Ankyrin 10.0
Pfam IPR002110 EMBL-EBI Ankyrin 5.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-8
Pfam IPR006034 EMBL-EBI Asparaginase/glutaminase 7.7E-55
Pfam IPR002110 EMBL-EBI Ankyrin 10.0
Pfam IPR002110 EMBL-EBI Ankyrin 5.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-8
Pfam IPR006034 EMBL-EBI Asparaginase/glutaminase 7.7E-55
Pfam IPR002110 EMBL-EBI Ankyrin 10.0
Pfam IPR002110 EMBL-EBI Ankyrin 5.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-8
Sequence
Target Sequence 
>C. ELEGANS:174881_S_AT
ttgaagtgtaatgaggcagccggaactcacatgggcgagaaggattatgacaatcggacg
gcgttgcatgtgccgcgtcactgaataagccagagattgtcgcctatcttctgcaatgtg
gtttgaatccacacgaaaaggatgattttggaattacacctatggatgaagcgaaacggc
gaaacttgcaaaatttaatggatatgatggcggaacaccaagctcttacaaataatgacg
aagtattccacttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAAGTGTAATGAGGCAGCCGGAA 643 685 29 Antisense
GCAGCCGGAACTCACATGGGCGAGA 709 313 44 Antisense
ATGACAATCGGACGGCGTTGCATGT 69 45 75 Antisense
GCCGCGTCACTGAATAAGCCAGAGA 537 285 100 Antisense
AAGCCAGAGATTGTCGCCTATCTTC 378 149 115 Antisense
CGCCTATCTTCTGCAATGTGGTTTG 643 257 129 Antisense
GGATGATTTTGGAATTACACCTATG 41 513 168 Antisense
GAAGCGAAACGGCGAAACTTGCAAA 454 331 196 Antisense
GATATGATGGCGGAACACCAAGCTC 505 425 229 Antisense
GCGGAACACCAAGCTCTTACAAATA 59 293 238 Antisense
TAATGACGAAGTATTCCACTTGGAA 164 637 261 Antisense
Sequence Source Affymetrix Proprietary Database