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[174880_at] glycosyltransferase

Description CEK124A6R_rc /REP_DB=TREMBL Accession /GB=D66811 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk124a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 33      6grp_highest_nonorm > 61      6grp_total > 10      4grp_total > 56      6grp_highest_sub > 02      6grp_cgc > 63      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1787
1 2 3 4 range
A 36
(-2.9)
A
1262.4
(1.2)
P
1797.9
(3)
P
10.6
(-3)
A
1787
B 46.1
(-2.9)
A
1323.5
(1.9)
P
1603.4
(3)
P
27.3
(-3)
A
1576
C 22.6
(-3)
A
1379.6
(1.8)
P
1725.6
(3)
P
41.3
(-2.9)
P
1703
avr 34.9
(-3)
1321.8
(1.6)
1709
(3)
26.4
(-3)
1683

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 615
1 2 3 4 5 6 range
A 237.6
(-1.5)
P
657.7
(3)
P
393.5
(0.2)
P
312.6
(-0.7)
P
391
(0.2)
P
93
(-3)
P
565
B 220.5
(-2.5)
P
707.9
(3)
P
264.5
(-2)
P
413
(-0.3)
P
295.7
(-1.6)
P
171.7
(-3)
P
536
C 182.2
(-2.5)
P
706.8
(3)
P
424.3
(0)
P
402.7
(-0.2)
P
323.8
(-1)
P
132.3
(-3)
P
575
avr 213.4
(-2.1)
690.8
(3)
360.8
(-0.5)
376.1
(-0.4)
336.8
(-0.8)
132.3
(-3)
559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 600
1 2 3 4 range
A 13.1
(-2.9)
A
274
(0.5)
P
470
(3)
P
1.6
(-3)
A
468
B 14.7
(-2.9)
A
326.9
(2.3)
P
371.6
(3)
P
5.8
(-3)
A
366
C 7.5
(-3)
A
396.6
(0.9)
P
601.4
(3)
P
7
(-3)
P
594
avr 11.8
(-2.9)
332.5
(1.1)
481
(3)
4.8
(-3)
476

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 43.8
(-2.4)
P
233.9
(3)
P
85.7
(-1.2)
P
79.3
(-1.4)
P
118
(-0.3)
P
22.6
(-3)
P
211
B 76.7
(-2.6)
P
235.6
(3)
P
64.2
(-3)
P
109.4
(-1.4)
P
120.1
(-1)
P
64
(-3)
P
172
C 67.5
(-2.2)
P
215.7
(3)
P
108
(-0.8)
P
81
(-1.7)
P
104.8
(-0.9)
P
44.3
(-3)
P
171
avr 62.7
(-2.4)
228.4
(3)
86
(-1.6)
89.9
(-1.5)
114.3
(-0.7)
43.6
(-3)
185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22263
Sequence Type Exemplar sequence
Representative Public ID CEK124A6R NCBI
Target Description CEK124A6R_rc /REP_DB=TREMBL Accession /GB=D66811 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk124a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076531(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_076531 NCBI Caenorhabditis elegans T23F2.1 (glycosyltransferase) mRNA, complete cds. 11/11 None
T23F2.1 ENSEMBL cdna:known chromosome:CEL140:X:5492940:5495964:1 gene:T23F2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5495549-5495906(+) 88.24 100.0
Public Domain and Genome References
Gene Title glycosyltransferase
Gene Symbol tag-249
Ensembl T23F2.1
Entrez Gene 180821 Entrez gene
SwissProt Q22698 EMBL-EBI
WormBase CE28488 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80383 Temporarily assigned gene name protein 249 [Caenorhabditis elegans] ref|NP_508932.1| T23F2.1 [Caenorhabditis elegans] 0.0
blast CAE68759 Hypothetical protein CBG14694 [Caenorhabditis briggsae] 0.0
blast XP_794663 PREDICTED: similar to alpha-1,3-mannosyltransferase ALG2 isoform 1 [Strongylocentrotus purpuratus] 7.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001296 EMBL-EBI Glycosyl transferase, group 1 9.1E-25
Sequence
Target Sequence
>C. ELEGANS:174880_AT
gttcatcattgcaattccagtaagtgtttcctagtaagttgtcatcgctctcagccaatt
tttttccgttcttatccagccggccctttccatcccactcaccctccccttaaattatta
tttaacgtttttatttaaaatttataatttaccattttgaaaataacaattctatccagt
tatatcattccgtaaaatgataattttctgaattcttgttttcacgggatatcattttaa
gcattcttctacttcttctctgttcagtgttctctttttgctcatttcttctctctttct
caatgtgaa


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GTTCATCATTGCAATTCCAGTAAGT 70 445 13 Antisense
GCAATTCCAGTAAGTGTTTCCTAGT 130 323 23 Antisense
CTAGTAAGTTGTCATCGCTCTCAGC 594 213 43 Antisense
ATTCTATCCAGTTATATCATTCCGT 496 11 181 Antisense
GATAATTTTCTGAATTCTTGTTTTC 157 423 211 Antisense
AATTCTTGTTTTCACGGGATATCAT 32 175 223 Antisense
GGGATATCATTTTAAGCATTCTTCT 562 495 238 Antisense
CATTTTAAGCATTCTTCTACTTCTT 385 215 245 Antisense
TCTACTTCTTCTCTGTTCAGTGTTC 581 613 260 Antisense
CTTCTCTGTTCAGTGTTCTCTTTTT 127 221 267 Antisense
TTTCTTCTCTCTTTCTCAATGTGAA 158 673 297 Antisense
Sequence Source Affymetrix Proprietary Database