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[174878_at]

Description CEK126D9R_rc /REP_DB=TREMBL Accession /GB=D64850 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk126d9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 90      6grp_total > 82      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 41.6
(-3)
A 		188.1
(1)
P 		258.8
(3)
P 		68.4
(-2.3)
A 		217
B 45.5
(-3)
A 		177.4
(0.4)
P 		281.4
(3)
P 		45.2
(-3)
A 		236
C 46.7
(-3)
A 		204.7
(0.7)
P 		307.3
(3)
P 		44.7
(-3)
A 		263
avr 44.6
(-3) 		190.1
(0.7) 		282.5
(3) 		52.8
(-2.8) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 6.6
(-3)
A 		143.4
(1.6)
P 		135.6
(1.3)
P 		178.3
(2.7)
P 		186.7
(3)
P 		83.7
(-0.4)
P 		180
B 45.8
(-3)
A 		203.7
(2.4)
P 		96.7
(-1.3)
P 		184.3
(1.7)
P 		221.5
(3)
P 		86.4
(-1.6)
P 		176
C 49.5
(-3)
P 		153.6
(2.2)
P 		69.7
(-2)
P 		138.1
(1.5)
P 		168.8
(3)
P 		51.8
(-2.9)
P 		119
avr 34
(-3) 		166.9
(2) 		100.7
(-0.5) 		166.9
(2) 		192.3
(3) 		74
(-1.5) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 15.2
(-2.5)
A 		40.8
(0.2)
P 		67.7
(3)
P 		10
(-3)
A 		58
B 14.5
(-2.5)
A 		43.8
(0.7)
P 		65.2
(3)
P 		9.6
(-3)
A 		56
C 15.5
(-2.5)
A 		58.9
(0.1)
P 		107.1
(3)
P 		7.5
(-3)
A 		100
avr 15.1
(-2.5) 		47.8
(0.3) 		80
(3) 		9
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 1.2
(-3)
A 		51
(2.4)
P 		29.5
(0.1)
P 		45.2
(1.8)
P 		56.4
(3)
P 		20.4
(-0.9)
P 		55
B 15.9
(-3)
A 		67.8
(1.2)
P 		23.5
(-2.4)
P 		48.8
(-0.3)
P 		90
(3)
P 		32.2
(-1.7)
P 		74
C 18.4
(-2.8)
P 		46.9
(1.8)
P 		17.7
(-2.9)
P 		27.8
(-1.3)
P 		54.6
(3)
P 		17.3
(-3)
P 		37
avr 11.8
(-3) 		55.2
(1.7) 		23.6
(-1.7) 		40.6
(0.1) 		67
(3) 		23.3
(-1.8) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174878_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22386
Sequence Type Exemplar sequence
Representative Public ID CEK126D9R NCBI
Target Description CEK126D9R_rc /REP_DB=TREMBL Accession /GB=D64850 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk126d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076280 NCBI Caenorhabditis elegans T19D2.1 (T19D2.1) mRNA, complete cds. 11/11 None
T19D2.1 ENSEMBL cdna:known chromosome:CEL140:X:3932835:3937859:1 gene:T19D2.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037612 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3937539-3937850(+) 98.73 98.73
Public Domain and Genome References
Gene Title
Ensembl T19D2.1
Entrez Gene 180675 Entrez gene
SwissProt Q22580 EMBL-EBI
WormBase CE30185 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83600 Hypothetical protein T19D2.1 [Caenorhabditis elegans] ref|NP_508681.2| T19D2.1 [Caenorhabditis elegans] 0.0
blast CAE68502 Hypothetical protein CBG14312 [Caenorhabditis briggsae] 0.0
blast CAE57226 Hypothetical protein CBG00091 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR001590 EMBL-EBI Peptidase M12B, ADAM/reprolysin 2.5E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 4.6E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 6.6E-13
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 6.6E-7
Sequence
Target Sequence 
>C. ELEGANS:174878_AT
agatgcattggttctcagtgctgatgcacatcacaacgtgtccaaagaaacacacacaga
gagccatcagtttttcaatcgaaaccacatgctgtctcagtagaacgaacgagaagaaga
gatttgaaatttaaaattcaaaattagtagcagactttatagatgtaatgctcttttttt
tctcgttccctgtgtactttcaacgcttttataattgttttaaactagacattctcagcg
ggtctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGCATTGGTTCTCAGTGCTGAT 652 67 38 Antisense
TTCTCAGTGCTGATGCACATCACAA 341 689 49 Antisense
GATGCACATCACAACGTGTCCAAAG 27 413 60 Antisense
GAAACACACACAGAGAGCCATCAGT 529 355 84 Antisense
GAGAGCCATCAGTTTTTCAATCGAA 191 395 96 Antisense
TTCAATCGAAACCACATGCTGTCTC 566 683 111 Antisense
TCGAAACCACATGCTGTCTCAGTAG 213 601 116 Antisense
ATGCTGTCTCAGTAGAACGAACGAG 346 41 126 Antisense
GACTTTATAGATGTAATGCTCTTTT 590 371 190 Antisense
CCTGTGTACTTTCAACGCTTTTATA 501 265 226 Antisense
ACTAGACATTCTCAGCGGGTCTCTC 135 101 261 Antisense
Sequence Source Affymetrix Proprietary Database