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[174877_at]

Description CEK133C4R_rc /REP_DB=TREMBL Accession /GB=D65234 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk133c4 : 3prime end, single read.
Cluster 6grp_total > 86      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 22.2
(-3)
A 		43.6
(3)
A 		37.8
(1.4)
A 		42.7
(2.7)
A 		21
B 40.3
(3)
A 		32.5
(0.2)
A 		40
(2.9)
A 		23.4
(-3)
A 		17
C 41.5
(-1.8)
A 		39
(-2.2)
A 		35
(-3)
A 		66.9
(3)
A 		32
avr 34.7
(-3) 		38.4
(-0.7) 		37.6
(-1.2) 		44.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 42.6
(-2.3)
A 		20
(-3)
A 		46.3
(-2.2)
A 		105.8
(-0.5)
P 		107.8
(-0.4)
P 		224.7
(3)
P 		205
B 20.6
(-3)
A 		56.2
(-1.7)
A 		85.4
(-0.7)
P 		86.5
(-0.7)
P 		130.3
(0.9)
P 		190.4
(3)
P 		170
C 37.1
(-3)
A 		45.1
(-2.8)
A 		44.8
(-2.8)
A 		79.3
(-1.7)
A 		127.3
(-0.2)
P 		231.2
(3)
P 		194
avr 33.4
(-3) 		40.4
(-2.8) 		58.8
(-2.2) 		90.5
(-1.1) 		121.8
(-0.1) 		215.4
(3) 		182
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.1
(-0)
A 		9.5
(2.3)
A 		9.9
(3)
A 		6.3
(-3)
A 		4
B 12.8
(3)
A 		8
(-0.7)
A 		9.3
(0.3)
A 		5
(-3)
A 		8
C 13.7
(3)
A 		11.2
(-3)
A 		12.2
(-0.6)
A 		11.3
(-2.8)
A 		3
avr 11.5
(3) 		9.6
(0.1) 		10.5
(1.5) 		7.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 7.8
(-2.9)
A 		7.1
(-3)
A 		10.1
(-2.6)
A 		26.8
(-0.5)
P 		32.5
(0.2)
P 		54.7
(3)
P 		48
B 7.2
(-3)
A 		18.7
(-1.9)
A 		20.7
(-1.7)
P 		22.9
(-1.5)
P 		52.9
(1.3)
P 		71
(3)
P 		64
C 13.8
(-2.8)
A 		13.8
(-2.8)
A 		11.4
(-3)
A 		16
(-2.6)
A 		41.2
(-0.3)
P 		77.4
(3)
P 		66
avr 9.6
(-3) 		13.2
(-2.6) 		14.1
(-2.5) 		21.9
(-1.7) 		42.2
(0.4) 		67.7
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21217
Sequence Type Exemplar sequence
Representative Public ID CEK133C4R NCBI
Target Description CEK133C4R_rc /REP_DB=TREMBL Accession /GB=D65234 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk133c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067084(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067084 NCBI Caenorhabditis elegans Y66D12A.17 (Y66D12A.17) mRNA, complete cds. 11/11 None
SNAP00000020808 ENSEMBL cdna:SNAP chromosome:CEL140:III:11497958:11523634:-1 10/11 None
GENEFINDER00000020845 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11512821:11518942:-1 11/11 None
Y66D12A.17 ENSEMBL cdna:known chromosome:CEL140:III:11512743:11523635:-1 gene:Y66D12A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11512748-11513136(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66D12A.17
Entrez Gene 176583 Entrez gene
SwissProt Q95Q00 EMBL-EBI
WormBase CE28798 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70137 Hypothetical protein Y66D12A.17 [Caenorhabditis elegans] ref|NP_499485.1| Y66D12A.17 [Caenorhabditis elegans] 0.0
blast CAE67701 Hypothetical protein CBG13271 [Caenorhabditis briggsae] 0.0
blast CAE67701 Hypothetical protein CBG13271 [Caenorhabditis briggsae] 1.0E-165
blast CAB01894 Hypothetical protein M163.4 [Caenorhabditis elegans] ref|NP_510409.1| GEI-4(Four) Interacting protein family member (gfi-3) [Caenorhabditis elegans] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR007829 EMBL-EBI TM2 4.6E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000020808 1 866-888
Sequence
Target Sequence 
>C. ELEGANS:174877_AT
gagaaagccatctatcacgtttcgatggctcgttgtctgcgtctcatgcacaaagatcct
cgagttcatctgaaacaatgcaaagcccaaatcatcggcaacaagtggccagcgatggag
aagcttctgctcaccgagctcacgattctccaccactcgggcggcctctatccggatgag
cagaaggagatgaaggcgaaggaacgattcggaaagattgaggcggattttcctgggcca
tgcacgtggatgtttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAAGCCATCTATCACGTTTCGA 385 393 25 Antisense
TCACGTTTCGATGGCTCGTTGTCTG 284 627 39 Antisense
GTCTGCGTCTCATGCACAAAGATCC 538 471 59 Antisense
TCATGCACAAAGATCCTCGAGTTCA 708 621 68 Antisense
GTTCATCTGAAACAATGCAAAGCCC 577 441 88 Antisense
TGCAAAGCCCAAATCATCGGCAACA 407 577 103 Antisense
ATCATCGGCAACAAGTGGCCAGCGA 544 27 115 Antisense
GCCAGCGATGGAGAAGCTTCTGCTC 579 279 132 Antisense
GGCCTCTATCCGGATGAGCAGAAGG 557 543 187 Antisense
TTGAGGCGGATTTTCCTGGGCCATG 671 675 242 Antisense
CTGGGCCATGCACGTGGATGTTTAT 526 239 257 Antisense
Sequence Source Affymetrix Proprietary Database