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[174876_at]

Description CEK119F4R_rc /REP_DB=TREMBL Accession /GB=D66622 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk119f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 58      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 83      6grp_total > 59      4grp_total > 10      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1226
1 2 3 4 range
A 691.6
(-1.1)
P 		565.2
(-2.2)
P 		468.5
(-3)
P 		1160.1
(3)
P 		692
B 425.6
(-3)
P 		552.8
(-2.4)
P 		720.3
(-1.6)
P 		1651.8
(3)
P 		1226
C 436.8
(-3)
P 		770.1
(-0.8)
P 		518.8
(-2.5)
P 		1343
(3)
P 		906
avr 518
(-3) 		629.4
(-2.2) 		569.2
(-2.6) 		1385
(3) 		867

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 470
1 2 3 4 5 6 range
A 540.6
(-0.7)
P 		548.7
(-0.5)
P 		383.9
(-3)
P 		503.3
(-1.2)
P 		522.7
(-0.9)
P 		786
(3)
P 		402
B 501.7
(1.6)
P 		397.8
(-1.4)
P 		342.7
(-3)
P 		482
(1)
P 		492
(1.3)
P 		550.4
(3)
P 		208
C 628.6
(3)
P 		490.6
(0.4)
P 		456
(-0.3)
P 		315.9
(-3)
P 		503.5
(0.6)
P 		616.1
(2.8)
P 		313
avr 557
(0.8) 		479
(-1) 		394.2
(-3) 		433.7
(-2.1) 		506.1
(-0.4) 		650.8
(3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 251.8
(3)
P 		122.7
(-3)
P 		122.5
(-3)
P 		169.8
(-0.8)
P 		129
B 135.7
(-3)
P 		136.5
(-3)
P 		166.9
(-2.1)
P 		352
(3)
P 		216
C 144.6
(-3)
P 		221.4
(2.6)
P 		180.8
(-0.3)
P 		226.4
(3)
P 		82
avr 177.4
(-1.7) 		160.2
(-2.8) 		156.7
(-3) 		249.4
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 99.7
(-2.1)
P 		195.1
(3)
P 		83.6
(-3)
P 		127.7
(-0.6)
P 		157.7
(1)
P 		191.4
(2.8)
P 		112
B 174.6
(1.5)
P 		132.4
(-0.6)
P 		83.2
(-3)
P 		127.7
(-0.8)
P 		199.9
(2.7)
P 		205.2
(3)
P 		122
C 233
(3)
P 		149.7
(0.1)
P 		116.1
(-1.1)
P 		63.5
(-3)
P 		162.9
(0.5)
P 		206.2
(2.1)
P 		170
avr 169.1
(1.2) 		159.1
(0.6) 		94.3
(-3) 		106.3
(-2.3) 		173.5
(1.5) 		200.9
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174876_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21600
Sequence Type Exemplar sequence
Representative Public ID CEK119F4R NCBI
Target Description CEK119F4R_rc /REP_DB=TREMBL Accession /GB=D66622 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk119f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171287(11), NM_171288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171287 NCBI Caenorhabditis elegans Y69A2AR.7a (Y69A2AR.7) mRNA, complete cds. 11/11 None
NM_171288 NCBI Caenorhabditis elegans Y69A2AR.7b (Y69A2AR.7) mRNA, complete cds. 11/11 None
Y69A2AR.7a ENSEMBL cdna:known chromosome:CEL140:IV:2601136:2607363:1 gene:Y69A2AR.7 11/11 None
Y69A2AR.7b.2 ENSEMBL cdna:known chromosome:CEL140:IV:2601171:2607359:1 gene:Y69A2AR.7 11/11 None
Y69A2AR.7b.1 ENSEMBL cdna:known chromosome:CEL140:IV:2601308:2607378:1 gene:Y69A2AR.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177040 3 2 NM_171287 174876_at (11)
NM_171288 174876_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2607020-2607359(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y69A2AR.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68581 Hypothetical protein Y69A2AR.7a [Caenorhabditis elegans] ref|NP_741338.1| Y69A2AR.7a [Caenorhabditis elegans] 1.0E-140
blast AAM15623 Hypothetical protein Y69A2AR.7b [Caenorhabditis elegans] ref|NP_741339.1| Y69A2AR.7b [Caenorhabditis elegans] 1.0E-105
blast CAE65572 Hypothetical protein CBG10567 [Caenorhabditis briggsae] 1.0E-93
blast AAK68581 Hypothetical protein Y69A2AR.7a [Caenorhabditis elegans] ref|NP_741338.1| Y69A2AR.7a [Caenorhabditis elegans] 2.0E-92
Sequence
Target Sequence 
>C. ELEGANS:174876_AT
ttcttccaatcttctctaaaaaatatgtgtaaaaatttgaaatttttttgtaaaaaatcc
cagtttctttctgtaaaatctagttttttttttggattcttctccatttttttcattgtt
ctctgtgcattttactcaattttttcactttttttttcatcaccaaattgatttttttgt
ctactttttttccttttctccgcatttaccttacaaaaacctcttcccttaggggaattc
caccactgaaattacctcttttctgcctgaaaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTCCAATCTTCTCTAAAAAATA 282 687 13 Antisense
ATCCCAGTTTCTTTCTGTAAAATCT 63 39 69 Antisense
GATTCTTCTCCATTTTTTTCATTGT 478 431 107 Antisense
TCTCCATTTTTTTCATTGTTCTCTG 198 611 113 Antisense
CATTGTTCTCTGTGCATTTTACTCA 634 217 126 Antisense
CTCTGTGCATTTTACTCAATTTTTT 115 233 133 Antisense
CTTTTTTTTTCATCACCAAATTGAT 52 221 160 Antisense
TCCCTTAGGGGAATTCCACCACTGA 366 597 237 Antisense
ATTCCACCACTGAAATTACCTCTTT 668 5 249 Antisense
TGAAATTACCTCTTTTCTGCCTGAA 676 571 259 Antisense
TTACCTCTTTTCTGCCTGAAAAATT 312 665 264 Antisense
Sequence Source Affymetrix Proprietary Database