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[174874_at]

Description CEK016HXR_rc /REP_DB=TREMBL Accession /GB=D32446 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16h10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 14      6grp_total > 35      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3689
1 2 3 4 range
A 5918.3
(3)
P 		4684.1
(0.9)
P 		4929.5
(1.3)
P 		2330.2
(-3)
P 		3588
B 6019
(3)
P 		5026.5
(0.9)
P 		5286.8
(1.4)
P 		3202.6
(-3)
P 		2816
C 5648.1
(3)
P 		5014.5
(1.8)
P 		5063.4
(1.9)
P 		2430.3
(-3)
P 		3218
avr 5861.8
(3) 		4908.4
(1.2) 		5093.2
(1.6) 		2654.4
(-3) 		3207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3181
1 2 3 4 5 6 range
A 5352.2
(3)
P 		4561.2
(1.3)
P 		3515.9
(-0.9)
P 		2533
(-3)
P 		2836.9
(-2.4)
P 		3136
(-1.7)
P 		2819
B 4221.4
(2.3)
P 		4411.2
(2.9)
P 		4458.7
(3)
P 		3532.6
(0.3)
P 		2404.3
(-3)
P 		3306.5
(-0.4)
P 		2054
C 3665.6
(1.2)
P 		4303
(3)
P 		4145.3
(2.6)
P 		3805.1
(1.6)
P 		2171.5
(-3)
P 		3770.2
(1.5)
P 		2132
avr 4413.1
(3) 		4425.1
(3) 		4040
(1.8) 		3290.2
(-0.5) 		2470.9
(-3) 		3404.2
(-0.1) 		1954
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1814
1 2 3 4 range
A 2154.9
(3)
P 		1016.8
(-0.8)
P 		1288.7
(0.1)
P 		341.1
(-3)
P 		1814
B 1919.4
(3)
P 		1241.4
(-0.3)
P 		1225.1
(-0.4)
P 		682.5
(-3)
P 		1237
C 1869.7
(3)
P 		1441.7
(1.2)
P 		1764.8
(2.6)
P 		409.8
(-3)
P 		1460
avr 1981.3
(3) 		1233.3
(0) 		1426.2
(0.8) 		477.8
(-3) 		1504

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 980
1 2 3 4 5 6 range
A 986.6
(-0.9)
P 		1622.2
(3)
P 		765.7
(-2.2)
P 		642.4
(-3)
P 		856.1
(-1.7)
P 		763.5
(-2.3)
P 		980
B 1468.8
(3)
P 		1468.3
(3)
P 		1082.7
(-1.3)
P 		935.7
(-3)
P 		976.8
(-2.5)
P 		1233
(0.3)
P 		533
C 1358.7
(3)
P 		1313
(2.6)
P 		1055.1
(0.2)
P 		765.2
(-2.4)
P 		702.7
(-3)
P 		1262.1
(2.1)
P 		656
avr 1271.4
(1.3) 		1467.8
(3) 		967.8
(-1.4) 		781.1
(-3) 		845.2
(-2.4) 		1086.2
(-0.3) 		687
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174874_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20996
Sequence Type Exemplar sequence
Representative Public ID CEK016HXR NCBI
Target Description CEK016HXR_rc /REP_DB=TREMBL Accession /GB=D32446 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16h10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066696 NCBI Caenorhabditis elegans yeast CLU (mitochondrial clustering) related family member (clu-1) (clu-1) mRNA, complete cds. 11/11 A 
F55H2.6.1 ENSEMBL cdna:known chromosome:CEL140:III:9516224:9521356:-1 gene:F55H2.6 11/11 None
F55H2.6.2 ENSEMBL cdna:known chromosome:CEL140:III:9516224:9521358:-1 gene:F55H2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9516543-9517128(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clu-1
Ensembl F55H2.6
Entrez Gene 176341 Entrez gene
SwissProt P34466 EMBL-EBI
WormBase CE00213 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18583_AT tetratricopeptide repeat (TPR)-containing protein at
ATH1-121501:252031_AT tetratricopeptide repeat (TPR)-containing protein at
CANINE_2:CFAAFFX.29484.1.S1_AT similar to Putative eukaryotic translation initiation factor 3 subunit (eIF-3) cfa
CANINE_2:CFAAFFX.29487.1.S1_AT similar to Putative eukaryotic translation initiation factor 3 subunit (eIF-3) cfa
DROSOPHILA_2:1627927_AT dm
DROSGENOME1:151655_AT dm
DROSGENOME1:142634_AT dm
CHICKEN:GGA.15957.1.S1_S_AT similar to KIAA0664 protein gga
CHICKEN:GGAAFFX.26629.2.S1_AT similar to KIAA0664 protein gga
CHICKEN:GGAAFFX.26629.3.S1_S_AT similar to KIAA0664 protein gga
MG-U74BV2:107290_AT RIKEN cDNA 1300001I01 gene mm
MG-U74BV2:162889_AT RIKEN cDNA 1300001I01 gene mm
MOE430A:1428106_AT RIKEN cDNA 1300001I01 gene mm
MOUSE430A_2:1428106_AT RIKEN cDNA 1300001I01 gene mm
MOUSE430_2:1428106_AT RIKEN cDNA 1300001I01 gene mm
MG-U74CV2:141129_AT RIKEN cDNA 1300001I01 gene mm
MU19KSUBB:TC26825_AT RIKEN cDNA 1300001I01 gene mm
MU19KSUBB:TC26232_AT RIKEN cDNA 1300001I01 gene, mRNA (cDNA clone IMAGE:5100665) mm
MU19KSUBC:TC40091_AT RIKEN cDNA 1300001I01 gene, mRNA (cDNA clone IMAGE:5100665) mm
MU19KSUBC:TC40091_G_AT RIKEN cDNA 1300001I01 gene, mRNA (cDNA clone IMAGE:5100665) mm
RAE230A:1398902_AT Similar to mKIAA0664 protein (predicted) rn
RAT230_2:1398902_AT Similar to mKIAA0664 protein (predicted) rn
RG-U34A:RC_AA892789_AT Similar to mKIAA0664 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA81605 Hypothetical protein F55H2.6 [Caenorhabditis elegans] emb|CAA80143.1| Hypothetical protein F55H2.6 [Caenorhabditis elegans] ref|NP_499097.1| yeast CLU (mitochondrial clustering) related family member (clu-1) [Caenorhabditis elegans] sp|P34466|IF3X_CAEEL Putative eukaryotic translation initiation factor 3 subunit (eIF-3) 0.0
blast AAC72406 CLU-1 [Caenorhabditis elegans] 0.0
blast CAE65192 Hypothetical protein CBG10067 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174874_AT
aaaccgtgaccgcattttcgttgcttttttgaaataattatatgagataattgcaccgtt
tctttctctgataaccaaaaacatttgctcaattccaaaaatcagcctgaaattttcaaa
tttgctcaggagcatttccctcatttcccacaacttaatcaatcacatgttcccgttttc
attgtcttctccatctatctgtaacccatttccttcatacatgttatgactgtcgttctg
acacgagtgtccatcgaaaaactaatcatttaaaaaatatacatctctgataatccgagt
acactccatcttttgttacactgatgcgtttgttctcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCGTGACCGCATTTTCGTTGCT 124 125 143 Antisense
AGATAATTGCACCGTTTCTTTCTCT 245 67 187 Antisense
CACCGTTTCTTTCTCTGATAACCAA 414 201 196 Antisense
TTTGCTCAGGAGCATTTCCCTCATT 506 667 263 Antisense
CCTCATTTCCCACAACTTAATCAAT 629 267 281 Antisense
AATCAATCACATGTTCCCGTTTTCA 558 169 299 Antisense
GTAACCCATTTCCTTCATACATGTT 204 463 343 Antisense
GACTGTCGTTCTGACACGAGTGTCC 159 375 370 Antisense
ATCTCTGATAATCCGAGTACACTCC 247 31 425 Antisense
GTACACTCCATCTTTTGTTACACTG 314 461 441 Antisense
GTTACACTGATGCGTTTGTTCTCCT 134 447 457 Antisense
Sequence Source Affymetrix Proprietary Database