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[174872_s_at]

Description CEK071DZR_rc /REP_DB=TREMBL Accession /GB=D65944 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk71d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 95      6grp_total > 78      4grp_total > 0      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 605.9
(-2.4)
P 		584.5
(-3)
P 		596.1
(-2.7)
P 		806
(3)
P 		222
B 655.7
(-3)
P 		670.5
(-2.6)
P 		789.9
(0.9)
P 		863.3
(3)
P 		208
C 735.8
(0.4)
P 		639.5
(-3)
P 		678.2
(-1.6)
P 		810.6
(3)
P 		171
avr 665.8
(-1.9) 		631.5
(-3) 		688.1
(-1.3) 		826.6
(3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 697
1 2 3 4 5 6 range
A 461.8
(-3)
P 		556
(-1.7)
P 		551.1
(-1.7)
P 		476.1
(-2.8)
P 		650.5
(-0.3)
P 		882.4
(3)
P 		421
B 548.7
(-2.3)
P 		481.1
(-3)
P 		744.2
(-0.4)
P 		506.8
(-2.7)
P 		758
(-0.3)
P 		1087.4
(3)
P 		606
C 454.9
(-3)
P 		553.4
(-2.2)
P 		508
(-2.5)
P 		476.1
(-2.8)
P 		632.3
(-1.5)
P 		1151.7
(3)
P 		697
avr 488.5
(-3) 		530.2
(-2.5) 		601.1
(-1.8) 		486.3
(-3) 		680.3
(-0.9) 		1040.5
(3) 		554
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 220.6
(3)
P 		126.9
(-2.5)
P 		155.8
(-0.8)
P 		118
(-3)
P 		103
B 209.1
(3)
P 		165.6
(-3)
P 		183
(-0.6)
P 		184
(-0.5)
P 		44
C 243.6
(3)
P 		183.9
(-0.4)
P 		236.4
(2.6)
P 		136.7
(-3)
P 		107
avr 224.4
(3) 		158.8
(-2) 		191.7
(0.5) 		146.2
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 85.1
(-3)
P 		197.7
(2.2)
P 		120
(-1.4)
P 		120.8
(-1.3)
P 		196.3
(2.1)
P 		214.8
(3)
P 		130
B 190.9
(-1.7)
P 		160.1
(-2.4)
P 		180.7
(-2)
P 		134.2
(-3)
P 		308
(0.8)
P 		405.5
(3)
P 		271
C 168.6
(-1.5)
P 		168.9
(-1.5)
P 		129.3
(-2.3)
P 		95.8
(-3)
P 		204.6
(-0.7)
P 		385.6
(3)
P 		290
avr 148.2
(-2.1) 		175.6
(-1.4) 		143.3
(-2.3) 		116.9
(-3) 		236.3
(0.3) 		335.3
(3) 		218
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174872_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20999
Sequence Type Exemplar sequence
Representative Public ID CEK071DZR NCBI
Target Description CEK071DZR_rc /REP_DB=TREMBL Accession /GB=D65944 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk71d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066142 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-37) (lin-37) mRNA, complete cds. 11/11 A 
SNAP00000003341 ENSEMBL cdna:SNAP chromosome:CEL140:III:7070928:7072478:-1 11/11 None
GENEFINDER00000003353 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7070928:7072478:-1 11/11 None
ZK418.4.1 ENSEMBL cdna:known chromosome:CEL140:III:7070810:7072480:-1 gene:ZK418.4 11/11 None
ZK418.4.2 ENSEMBL cdna:known chromosome:CEL140:III:7070829:7072478:-1 gene:ZK418.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7070836-7071346(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lin-37
Ensembl ZK418.4
Entrez Gene 175986 Entrez gene
SwissProt Q23482 EMBL-EBI
WormBase CE25690 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50688 Abnormal cell lineage protein 37 [Caenorhabditis elegans] ref|NP_498543.1| abnormal cell LINeage family member (lin-37) [Caenorhabditis elegans] 1.0E-147
blast CAE70074 Hypothetical protein CBG16515 [Caenorhabditis briggsae] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:174872_S_AT
agctgccaattgttccatctagaatcgatgaattcgacgctacagtcgatccaagatatg
aaacagatttgaaaaatgaatacattcgtcattggaaacaattggtgtgctcatcaacgt
cgtcggactgctccccatgcaagaagcatagcattaatcaacaaaatctaccagcctgga
gagtcgaaaactgtcgagcaagcacttggtcttattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGCCAATTGTTCCATCTAGAAT 239 81 14 Antisense
GCCAATTGTTCCATCTAGAATCGAT 470 277 18 Antisense
GAATCGATGAATTCGACGCTACAGT 582 329 35 Antisense
GACGCTACAGTCGATCCAAGATATG 638 379 49 Antisense
GACTGCTCCCCATGCAAGAAGCATA 332 373 139 Antisense
GCTCCCCATGCAAGAAGCATAGCAT 376 299 143 Antisense
AGAAGCATAGCATTAATCAACAAAA 88 75 155 Antisense
ATCAACAAAATCTACCAGCCTGGAG 507 27 170 Antisense
CTACCAGCCTGGAGAGTCGAAAACT 684 221 181 Antisense
GAAAACTGTCGAGCAAGCACTTGGT 434 355 199 Antisense
GTCGAGCAAGCACTTGGTCTTATTT 431 473 206 Antisense
Sequence Source Affymetrix Proprietary Database