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[174871_at]

Description CEK051CZR_rc /REP_DB=TREMBL Accession /GB=D70914 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk51c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 77      6grp_total > 58      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1649
1 2 3 4 range
A 1586
(1.5)
P 		1205.8
(-1.5)
P 		1005.6
(-3)
P 		1783.2
(3)
P 		778
B 1640.4
(-0.6)
P 		977.2
(-3)
P 		1014.9
(-2.9)
P 		2626.1
(3)
P 		1649
C 1444.3
(-1.1)
P 		1072.2
(-3)
P 		1170.4
(-2.5)
P 		2259.6
(3)
P 		1187
avr 1556.9
(-0.4) 		1085.1
(-2.9) 		1063.6
(-3) 		2223
(3) 		1159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 999
1 2 3 4 5 6 range
A 1449.2
(0.9)
P 		1280
(-0.6)
P 		1019.1
(-3)
P 		1288.5
(-0.6)
P 		1350.9
(0)
P 		1681.7
(3)
P 		663
B 1633.9
(0.4)
P 		1255
(-2.2)
P 		1356.1
(-1.5)
P 		1137.7
(-3)
P 		1374
(-1.4)
P 		2018.4
(3)
P 		881
C 1535.7
(-0)
P 		1238.3
(-2)
P 		1241.3
(-2)
P 		1093.5
(-3)
P 		1274.2
(-1.8)
P 		1981.7
(3)
P 		888
avr 1539.6
(0.1) 		1257.8
(-2.3) 		1205.5
(-2.7) 		1173.2
(-3) 		1333
(-1.7) 		1893.9
(3) 		721
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 577.5
(3)
P 		261.8
(-3)
P 		262.9
(-3)
P 		261
(-3)
P 		317
B 523.1
(2.3)
P 		241.3
(-2.9)
P 		235.2
(-3)
P 		559.6
(3)
P 		324
C 478.1
(3)
P 		308.3
(-3)
P 		407.9
(0.5)
P 		381
(-0.4)
P 		170
avr 526.2
(3) 		270.5
(-3) 		302
(-2.3) 		400.5
(0.1) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 533
1 2 3 4 5 6 range
A 267.2
(-1.8)
P 		455.2
(3)
P 		221.9
(-3)
P 		326.8
(-0.3)
P 		407.6
(1.8)
P 		409.4
(1.8)
P 		233
B 568.5
(0.6)
P 		417.7
(-1.5)
P 		329.3
(-2.6)
P 		301.3
(-3)
P 		558.2
(0.4)
P 		752.6
(3)
P 		451
C 569.2
(1.7)
P 		377.9
(-0.9)
P 		315.9
(-1.7)
P 		219.9
(-3)
P 		412.3
(-0.4)
P 		663.4
(3)
P 		444
avr 468.3
(0.4) 		416.9
(-0.5) 		289
(-2.9) 		282.7
(-3) 		459.4
(0.3) 		608.5
(3) 		326
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21780
Sequence Type Exemplar sequence
Representative Public ID CEK051CZR NCBI
Target Description CEK051CZR_rc /REP_DB=TREMBL Accession /GB=D70914 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk51c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171491(11), NM_171492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171491 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-283) (tag-283) mRNA, complete cds. 11/11 None
NM_171492 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-283) (tag-283) mRNA, complete cds. 11/11 None
F41E6.13a ENSEMBL cdna:known chromosome:CEL140:V:8631811:8633913:-1 gene:F41E6.13 11/11 A 
F41E6.13b.1 ENSEMBL cdna:known chromosome:CEL140:V:8631857:8633913:-1 gene:F41E6.13 11/11 None
F41E6.13b.2 ENSEMBL cdna:known chromosome:CEL140:V:8631857:8633915:-1 gene:F41E6.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8631889-8632231(-) 100.0 100.0
Public Domain and Genome References
Ensembl F41E6.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65961 Temporarily assigned gene name protein 283, isoform a [Caenorhabditis elegans] ref|NP_741576.1| Temporarily Assigned Gene name family member (tag-283) [Caenorhabditis elegans] 0.0
blast AAM45377 Temporarily assigned gene name protein 283, isoform b [Caenorhabditis elegans] ref|NP_741577.1| Temporarily Assigned Gene name family member (tag-283) [Caenorhabditis elegans] 0.0
blast CAE58348 Hypothetical protein CBG01469 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.5E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.097
Sequence
Target Sequence 
>C. ELEGANS:174871_AT
ttccatctttgtattattatcatgcagatgtacatcaccatccatctcacttttcttctt
gttctatcacatgcttctcccattttccctgtatcttctcgtcccactgttttcccgtaa
tagctggctagtccacgaaattctgaatagtgagtgtgcatacgttattcacgttattta
aacaatttttatcacatttttcctgaatacttttcttgttttgtaaactcgcctcacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCATCTTTGTATTATTATCATGC 283 701 43 Antisense
AGATGTACATCACCATCCATCTCAC 538 67 68 Antisense
CACTTTTCTTCTTGTTCTATCACAT 284 197 90 Antisense
TCTTCTTGTTCTATCACATGCTTCT 363 617 96 Antisense
CCCACTGTTTTCCCGTAATAGCTGG 403 257 145 Antisense
GTTTTCCCGTAATAGCTGGCTAGTC 123 447 151 Antisense
CTGGCTAGTCCACGAAATTCTGAAT 182 241 166 Antisense
AATTCTGAATAGTGAGTGTGCATAC 447 173 181 Antisense
GTGTGCATACGTTATTCACGTTATT 364 487 196 Antisense
ACATTTTTCCTGAATACTTTTCTTG 648 103 236 Antisense
CTTGTTTTGTAAACTCGCCTCACAC 698 217 257 Antisense
Sequence Source Affymetrix Proprietary Database