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[174869_at]

Description CEK112C4R_rc /REP_DB=TREMBL Accession /GB=D72988 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112c4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 07      4grp_high_8_8 > 16      6grp_total > 16      4grp_total > 31      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 172.6
(3)
P 		91.4
(-1.3)
P 		60
(-3)
P 		138.2
(1.2)
P 		113
B 187.8
(3)
P 		56.2
(-3)
A 		99.8
(-1)
P 		89.8
(-1.5)
P 		132
C 119
(3)
P 		68.7
(-3)
P 		71.2
(-2.7)
P 		100
(0.7)
P 		50
avr 159.8
(3) 		72.1
(-3) 		77
(-2.7) 		109.3
(-0.5) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 157.5
(3)
P 		134.7
(1.6)
P 		126.5
(1.1)
P 		57.9
(-3)
A 		106.9
(-0)
P 		89.2
(-1.1)
P 		100
B 113.4
(3)
P 		111.3
(2.8)
P 		40.7
(-3)
P 		101.1
(2)
P 		63.4
(-1.1)
P 		87.6
(0.9)
P 		73
C 141.5
(3)
P 		76.5
(-1.3)
P 		57.3
(-2.6)
P 		67.5
(-1.9)
A 		54.6
(-2.8)
P 		51.2
(-3)
P 		90
avr 137.5
(3) 		107.5
(0.1) 		74.8
(-3) 		75.5
(-2.9) 		75
(-3) 		76
(-2.9) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 62.9
(3)
P 		19.8
(-2.5)
P 		15.7
(-3)
P 		20.2
(-2.4)
P 		47
B 59.9
(3)
P 		13.9
(-3)
A 		23.1
(-1.8)
P 		19.1
(-2.3)
P 		46
C 39.4
(3)
P 		19.7
(-2.3)
P 		24.8
(-0.9)
P 		16.9
(-3)
P 		23
avr 54.1
(3) 		17.8
(-3) 		21.2
(-2.4) 		18.7
(-2.9) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 29
(-0.4)
P 		47.9
(3)
P 		27.5
(-0.7)
P 		14.7
(-3)
A 		32.3
(0.2)
P 		21.7
(-1.7)
P 		33
B 39.5
(3)
P 		37.1
(2.5)
P 		9.9
(-3)
P 		26.8
(0.4)
P 		25.8
(0.2)
P 		32.7
(1.6)
P 		30
C 52.4
(3)
P 		23.3
(-1.5)
P 		14.6
(-2.8)
P 		13.6
(-3)
A 		17.7
(-2.4)
P 		17.2
(-2.4)
P 		39
avr 40.3
(3) 		36.1
(1.9) 		17.3
(-3) 		18.4
(-2.7) 		25.3
(-0.9) 		23.9
(-1.3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21108
Sequence Type Exemplar sequence
Representative Public ID CEK112C4R NCBI
Target Description CEK112C4R_rc /REP_DB=TREMBL Accession /GB=D72988 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065687 NCBI Caenorhabditis elegans T BoX family member (tbx-2) (tbx-2) mRNA, complete cds. 11/11 None
F21H11.3.2 ENSEMBL cdna:known chromosome:CEL140:III:5130884:5136276:-1 gene:F21H11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F21H11.3.1 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5130905-5131171(-) 87.59 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tbx-2
Ensembl F21H11.3
Entrez Gene 175698 Entrez gene
SwissProt Q19691 EMBL-EBI
WormBase CE01245 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16322.1.S1_S_AT T-box 2 cfa
DROSOPHILA_2:1637049_AT bifid dm
DROSGENOME1:143084_AT bifid dm
HG-U133A:40560_AT T-box 2 hs
HG-U133A_2:40560_AT T-box 2 hs
HG-FOCUS:40560_AT T-box 2 hs
HG-U133_PLUS_2:40560_AT T-box 2 hs
HG-U95AV2:40560_AT T-box 2 hs
HG-U133_PLUS_2:205993_S_AT T-box 2 hs
HG-U133A:205993_S_AT T-box 2 hs
HG-U133A_2:205993_S_AT T-box 2 hs
HUGENEFL:U28049_AT T-box 2 hs
HUGENEFL:S81264_S_AT T-box 2 hs
U133_X3P:G5174712_3P_S_AT T-box 2 hs
U133_X3P:HS.322856.0.S1_3P_S_AT T-box 2 hs
U133_X3P:HS.322856.0.S1_3P_AT T-box 2 hs
U133_X3P:213417_3P_AT T-box 2 hs
HG-U133A_2:213417_AT T-box 2 hs
HG-U133_PLUS_2:213417_AT T-box 2 hs
HG-U133A:213417_AT T-box 2 hs
HG-U95E:73340_F_AT T-box 2 hs
MU11KSUBA:U15566_S_AT T-box 2 mm
MG-U74AV2:92705_AT T-box 2 mm
MOE430A:1422545_AT T-box 2 mm
MOUSE430A_2:1422545_AT T-box 2 mm
MOUSE430_2:1422545_AT T-box 2 mm
MG-U74AV2:104655_AT T-box 2 (Tbx2), mRNA mm
MU19KSUBA:TC15140_S_AT T-box 2 (Tbx2), mRNA mm
MU19KSUBA:TC15356_AT T-box 2 (Tbx2), mRNA mm
MU19KSUBA:TC15356_G_AT T-box 2 (Tbx2), mRNA mm
MU19KSUBA:TC15357_AT T-box 2 (Tbx2), mRNA mm
RG-U34B:RC_AA955150_AT T-box 2 (predicted) rn
RAE230A:1390660_AT T-box 2 (predicted) rn
RAT230_2:1390660_AT T-box 2 (predicted) rn
RAE230A:1375281_AT T-box 2 (predicted) rn
RAT230_2:1375281_AT T-box 2 (predicted) rn
RAE230B:1395332_AT T-box 2 (predicted) rn
RAT230_2:1395332_AT T-box 2 (predicted) rn
RAE230A:1375556_AT T-box 2 (predicted) rn
RAT230_2:1375556_AT T-box 2 (predicted) rn
RAE230B:1377548_AT T-box 2 (predicted) rn
RAT230_2:1377548_AT T-box 2 (predicted) rn
RAE230B:1377874_AT T-box 2 (predicted) rn
RAT230_2:1377874_AT T-box 2 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498088 T BoX family member (tbx-2) [Caenorhabditis elegans] sp|Q19691|TBX2_CAEEL T-box protein 2 gb|AAF99909.1| T box family protein 2 [Caenorhabditis elegans] 0.0
blast CAE73772 Hypothetical protein CBG21316 [Caenorhabditis briggsae] 0.0
blast BAD16722.1 T-box protein Optomotor blind [Achaearanea tepidariorum] 8.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174869_AT
tctctctttccaagcgggcataatatttttgtttctttacaaaaaatccctcaaaatagt
caatagaatttcaactttttctggtcctcaactatttatagcttttagacatttattcat
cttcaaattttcctttttctctctcaatcttcttattgtacattttcgcgtccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTCTTTCCAAGCGGGCATAATA 143 613 65 Antisense
GCGGGCATAATATTTTTGTTTCTTT 75 293 78 Antisense
AAAATCCCTCAAAATAGTCAATAGA 520 129 107 Antisense
TAGTCAATAGAATTTCAACTTTTTC 646 651 121 Antisense
TTCAACTTTTTCTGGTCCTCAACTA 680 685 134 Antisense
CAACTTTTTCTGGTCCTCAACTATT 138 189 136 Antisense
TTCTGGTCCTCAACTATTTATAGCT 194 695 143 Antisense
TATTTATAGCTTTTAGACATTTATT 315 661 157 Antisense
TTCATCTTCAAATTTTCCTTTTTCT 288 689 180 Antisense
TTTTCTCTCTCAATCTTCTTATTGT 414 677 199 Antisense
TTCTTATTGTACATTTTCGCGTCCC 170 683 214 Antisense
Sequence Source Affymetrix Proprietary Database