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[174868_s_at]

Description CEK119E2R_rc /REP_DB=TREMBL Accession /GB=D66616 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk119e2 : 3prime end, single read.
Cluster 6grp_total > 79      4grp_total > 63      6grp_cgc > 59      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 110.7
(3)
A 		90.2
(1.7)
A 		104.2
(2.6)
A 		16.4
(-3)
A 		94
B 145.4
(3)
A 		85.8
(-1.5)
A 		80.4
(-2)
A 		66.8
(-3)
A 		79
C 71.4
(0.4)
A 		19.8
(-3)
A 		109.8
(3)
A 		104.5
(2.6)
A 		90
avr 109.2
(3) 		65.3
(-2.7) 		98.1
(1.6) 		62.6
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 67
(-1.5)
A 		82
(-0.7)
A 		40.1
(-3)
A 		46.6
(-2.6)
A 		122.9
(1.5)
A 		149.5
(3)
P 		109
B 86
(-0.4)
A 		111.8
(1.3)
A 		56.3
(-2.3)
A 		46.3
(-3)
A 		112.1
(1.3)
P 		137.9
(3)
P 		92
C 38.5
(-1.7)
A 		51.9
(-1.1)
A 		82.5
(0.3)
A 		11
(-3)
A 		90.5
(0.7)
A 		140.9
(3)
P 		130
avr 63.8
(-1.4) 		81.9
(-0.4) 		59.6
(-1.6) 		34.6
(-3) 		108.5
(1.1) 		142.8
(3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 40.3
(3)
A 		19.6
(-0.3)
A 		27.2
(0.9)
A 		2.4
(-3)
A 		38
B 46.4
(3)
A 		21.2
(-1.7)
A 		18.6
(-2.2)
A 		14.2
(-3)
A 		32
C 23.6
(0.3)
A 		5.7
(-3)
A 		38.3
(3)
A 		17.6
(-0.8)
A 		33
avr 36.8
(3) 		15.5
(-2) 		28
(0.9) 		11.4
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 12.4
(-2.2)
A 		29.1
(1.3)
A 		8.7
(-3)
A 		11.8
(-2.3)
A 		37.1
(3)
A 		36.4
(2.9)
P 		28
B 29.9
(-0.3)
A 		37.2
(0.8)
A 		13.7
(-2.8)
A 		12.3
(-3)
A 		45.5
(2.1)
P 		51.4
(3)
P 		39
C 14.3
(-1.4)
A 		15.8
(-1.2)
A 		21
(-0.5)
A 		2.2
(-3)
A 		29.3
(0.6)
A 		47.2
(3)
P 		45
avr 18.9
(-1.3) 		27.4
(0.1) 		14.5
(-2.1) 		8.8
(-3) 		37.3
(1.7) 		45
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174868_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21998
Sequence Type Exemplar sequence
Representative Public ID CEK119E2R NCBI
Target Description CEK119E2R_rc /REP_DB=TREMBL Accession /GB=D66616 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk119e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071637(11), NM_182367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071637 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-9) (mtm-9) mRNA, complete cds. 11/11 A 
NM_182367 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-9) (mtm-9) mRNA, complete cds. 11/11 None
SNAP00000040118 ENSEMBL cdna:SNAP chromosome:CEL140:V:3743393:3756682:1 11/11 None
GENEFINDER00000040126 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3743393:3750532:1 11/11 None
Y39H10A.3a.1 ENSEMBL cdna:known chromosome:CEL140:V:3743389:3749084:1 gene:Y39H10A.3 11/11 None
Y39H10A.3b ENSEMBL cdna:known chromosome:CEL140:V:3743391:3749214:1 gene:Y39H10A.3 11/11 None
Y39H10A.3a.2 ENSEMBL cdna:known chromosome:CEL140:V:3743391:3749084:1 gene:Y39H10A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3745219-3745530(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y39H10A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84604 Mtm (myotubularin) family protein 9, isoform a [Caenorhabditis elegans] ref|NP_504038.1| MTM (myotubularin) family member (mtm-9) [Caenorhabditis elegans] gb|AAP79303.1| myotubularin-related protein MTM-9 [Caenorhabditis elegans] 0.0
blast CAE62558 Hypothetical protein CBG06668 [Caenorhabditis briggsae] 0.0
blast AAT68891 Mtm (myotubularin) family protein 9, isoform b [Caenorhabditis elegans] ref|NP_872167.2| MTM (myotubularin) family member (mtm-9) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010569 EMBL-EBI Myotubularin-related 6.1E-62
Pfam IPR010569 EMBL-EBI Myotubularin-related 6.1E-62
Pfam IPR010569 EMBL-EBI Myotubularin-related 9.1E-62
Sequence
Target Sequence 
>C. ELEGANS:174868_S_AT
tttccggtgctcagctattttcataaagagaccaaatcgccgttggtcagatgctctcag
ccattgattgggccgacgaatcgacggtgtcgcgaagatgagacgatcctgaactcgatg
attacggttaatagaggatatattattgatactaggagtaaatcatcggctactgcggcg
aaggctaaaggtggaggtgccgagccgcaaggcaattataggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCGGTGCTCAGCTATTTTCATA 548 669 13 Antisense
CAAATCGCCGTTGGTCAGATGCTCT 531 193 45 Antisense
GGTCAGATGCTCTCAGCCATTGATT 28 503 57 Antisense
TCTCAGCCATTGATTGGGCCGACGA 113 613 67 Antisense
GGCCGACGAATCGACGGTGTCGCGA 398 543 83 Antisense
GGTGTCGCGAAGATGAGACGATCCT 681 499 98 Antisense
GACGATCCTGAACTCGATGATTACG 333 377 114 Antisense
GTAAATCATCGGCTACTGCGGCGAA 63 461 170 Antisense
GGCTACTGCGGCGAAGGCTAAAGGT 116 503 180 Antisense
CTAAAGGTGGAGGTGCCGAGCCGCA 345 225 197 Antisense
GCCGAGCCGCAAGGCAATTATAGGC 155 285 211 Antisense
Sequence Source Affymetrix Proprietary Database