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[174867_at]

Description CEK090C4R_rc /REP_DB=TREMBL Accession /GB=D72135 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk90c4 : 3prime end, single read.
Cluster 6grp_total > 53      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 56.3
(-1.1)
A 		58.5
(-0.8)
A 		37.7
(-3)
A 		95.2
(3)
A 		58
B 84.5
(3)
A 		8.1
(-3)
A 		41.8
(-0.4)
A 		76.7
(2.4)
A 		76
C 48
(-3)
A 		77.5
(0.9)
A 		53.8
(-2.2)
A 		93.6
(3)
A 		46
avr 62.9
(-0.5) 		48
(-2.5) 		44.4
(-3) 		88.5
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 45.7
(-1)
A 		54.5
(-0.2)
A 		90.5
(3)
A 		22.7
(-3)
A 		70
(1.2)
A 		67.2
(0.9)
A 		68
B 47.8
(2.7)
A 		28.3
(-1)
A 		42.6
(1.7)
A 		49.2
(3)
A 		17.7
(-3)
A 		44
(2)
A 		32
C 57.7
(1.4)
A 		58.6
(1.6)
A 		64.7
(3)
A 		52.8
(0.3)
A 		64.8
(3)
A 		37.9
(-3)
A 		27
avr 50.4
(-0.8) 		47.1
(-1.6) 		65.9
(3) 		41.6
(-3) 		50.8
(-0.7) 		49.7
(-1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 20.5
(3)
A 		12.7
(-1.4)
A 		9.9
(-3)
A 		13.9
(-0.7)
A 		11
B 26.9
(3)
A 		2
(-3)
A 		9.7
(-1.1)
A 		16.3
(0.4)
A 		25
C 15.9
(-2.9)
A 		22.3
(3)
A 		18.8
(-0.2)
A 		15.8
(-3)
A 		7
avr 21.1
(3) 		12.3
(-3) 		12.8
(-2.7) 		15.3
(-1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.4
(-2)
A 		19.4
(2.3)
A 		19.7
(2.5)
A 		5.8
(-3)
A 		21.1
(3)
A 		16.4
(1.2)
A 		15
B 16.6
(3)
A 		9.4
(-1.6)
A 		10.3
(-1)
A 		13
(0.7)
A 		7.2
(-3)
A 		16.4
(2.9)
A 		9
C 21.4
(3)
A 		17.9
(1.1)
A 		16.5
(0.3)
A 		10.6
(-3)
A 		21
(2.8)
A 		12.7
(-1.8)
A 		11
avr 15.5
(2.2) 		15.6
(2.3) 		15.5
(2.2) 		9.8
(-3) 		16.4
(3) 		15.2
(1.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174867_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22391
Sequence Type Exemplar sequence
Representative Public ID CEK090C4R NCBI
Target Description CEK090C4R_rc /REP_DB=TREMBL Accession /GB=D72135 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk90c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK090C4R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK090C4R CEK090C4R_rc /REP_DB=TREMBL Accession /GB=D72135 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk90c4 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1848798-1849055(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174867_AT
gtgatgtcatcaaggcgtcattggaatgagttaaattggcgataagttcaacacaaccaa
aatgtacgtgtaccgcggctggaacagaatccagaaatcaccaagcttatcggaacaata
attggaagacatacttggtggaatgccaccgttagagtcgaggcgttggagcagccataa
atagataatctcaataattttggtgctcccccaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATGTCATCAAGGCGTCATTGGA 58 485 19 Antisense
CACAACCAAAATGTACGTGTACCGC 686 187 70 Antisense
ACGTGTACCGCGGCTGGAACAGAAT 557 95 84 Antisense
AATCCAGAAATCACCAAGCTTATCG 510 167 106 Antisense
AATCACCAAGCTTATCGGAACAATA 57 171 114 Antisense
GAAGACATACTTGGTGGAATGCCAC 35 341 143 Antisense
GTGGAATGCCACCGTTAGAGTCGAG 434 489 156 Antisense
GCCACCGTTAGAGTCGAGGCGTTGG 576 273 163 Antisense
GAGTCGAGGCGTTGGAGCAGCCATA 38 401 173 Antisense
ATCTCAATAATTTTGGTGCTCCCCC 195 33 206 Antisense
CAATAATTTTGGTGCTCCCCCAATT 142 173 210 Antisense
Sequence Source Affymetrix Proprietary Database