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[174865_at]

Description CEK010C1R_rc /REP_DB=TREMBL Accession /GB=D27466 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 31      6grp_total > 27      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1128
1 2 3 4 range
A 1722.6
(3)
P 		806.3
(-2.4)
P 		712.3
(-3)
P 		1241.6
(0.1)
P 		1010
B 1691.9
(3)
P 		813.4
(-1.8)
P 		594.6
(-3)
P 		1221.2
(0.4)
P 		1097
C 1619.9
(3)
P 		754.8
(-2.9)
P 		746.7
(-3)
P 		1331.3
(1)
P 		873
avr 1678.1
(3) 		791.5
(-2.4) 		684.5
(-3) 		1264.7
(0.5) 		994

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1138
1 2 3 4 5 6 range
A 1712.9
(3)
P 		1042.9
(-0.6)
P 		667.8
(-2.6)
P 		585.5
(-3)
P 		870.1
(-1.5)
P 		854.7
(-1.6)
P 		1127
B 1317.4
(3)
P 		1091.1
(1.2)
P 		719.4
(-1.8)
P 		867.2
(-0.6)
P 		575.1
(-3)
P 		903.7
(-0.3)
P 		742
C 1011.8
(2.3)
P 		1067.9
(3)
P 		829.7
(0)
P 		1001.6
(2.2)
P 		583.9
(-3)
P 		936.2
(1.4)
P 		484
avr 1347.4
(3) 		1067.3
(0.5) 		739
(-2.4) 		818.1
(-1.7) 		676.4
(-3) 		898.2
(-1) 		671
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 489
1 2 3 4 range
A 627.2
(3)
P 		175
(-3)
P 		186.2
(-2.9)
P 		181.7
(-2.9)
P 		452
B 539.5
(3)
P 		200.9
(-2.1)
P 		137.8
(-3)
P 		260.2
(-1.2)
P 		402
C 536.2
(3)
P 		217
(-3)
P 		260.3
(-2.2)
P 		224.5
(-2.9)
P 		319
avr 567.6
(3) 		197.6
(-3) 		194.8
(-3) 		222.1
(-2.6) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 315.8
(1.5)
P 		370.9
(3)
P 		145.4
(-3)
P 		148.5
(-2.9)
P 		262.6
(0.1)
P 		208.1
(-1.3)
P 		226
B 458.4
(3)
P 		363.2
(1)
P 		174.7
(-3)
P 		229.7
(-1.8)
P 		233.7
(-1.8)
P 		337
(0.4)
P 		284
C 375
(3)
P 		325.9
(1.4)
P 		211.2
(-2.3)
P 		201.4
(-2.6)
P 		188.9
(-3)
P 		313.4
(1)
P 		186
avr 383.1
(3) 		353.3
(2.1) 		177.1
(-3) 		193.2
(-2.5) 		228.4
(-1.5) 		286.2
(0.2) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22396
Sequence Type Exemplar sequence
Representative Public ID CEK010C1R NCBI
Target Description CEK010C1R_rc /REP_DB=TREMBL Accession /GB=D27466 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029540 NCBI Caenorhabditis elegans F54G2.1a (F54G2.1) mRNA, complete cds. 11/11 None
F54G2.1a ENSEMBL cdna:known chromosome:CEL140:X:2621270:2664366:-1 gene:F54G2.1 11/11 None
F54G2.1b ENSEMBL cdna:known chromosome:CEL140:X:2621288:2630698:-1 gene:F54G2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180562 2 1 NM_001029540 174865_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2621288-2621674(-) 100.0 100.0
Public Domain and Genome References
Ensembl F54G2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024711 F54G2.1a [Caenorhabditis elegans] 0.0
blast AAZ91357 Hypothetical protein F54G2.1a [Caenorhabditis elegans] 0.0
blast CAE58850 Hypothetical protein CBG02073 [Caenorhabditis briggsae] 0.0
blast AAP40529 Hypothetical protein F54G2.1b [Caenorhabditis elegans] ref|NP_001024712.1| F54G2.1b [Caenorhabditis elegans] 0.0
blast T33337 hypothetical protein F54G2.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.7E-56
Pfam IPR000008 EMBL-EBI C2 domain 3.9E-6
Pfam IPR000008 EMBL-EBI C2 domain 6.3E-8
Pfam IPR000008 EMBL-EBI C2 domain 6.4E-29
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.7E-56
Pfam IPR000008 EMBL-EBI C2 domain 3.9E-6
Pfam IPR000008 EMBL-EBI C2 domain 6.3E-8
Sequence
Target Sequence 
>C. ELEGANS:174865_AT
attacatgcattcatcatccctttgtaacttttttttgttcatttcaaatgcaaatactt
cattacatacgcttgggccttttcacaatctcttcattttccattaatgcgtagtagctt
tcgaccaaactagctgatctccctgtggttttttcactgatctcttttgttttatcctga
cccgacgtaattttctggcatctctctttttgtacccataaaaatgtcctgacgtataga
tgtgaagtggcaatatgctggttgtgttccgtttgatgacgacattcgctttccagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACATGCATTCATCATCCCTTTG 405 13 71 Antisense
TCATCATCCCTTTGTAACTTTTTTT 106 621 82 Antisense
TTACATACGCTTGGGCCTTTTCACA 331 683 133 Antisense
AATGCGTAGTAGCTTTCGACCAAAC 142 149 176 Antisense
CCAAACTAGCTGATCTCCCTGTGGT 571 275 195 Antisense
TGATCTCCCTGTGGTTTTTTCACTG 32 565 205 Antisense
GATCTCTTTTGTTTTATCCTGACCC 381 419 229 Antisense
GACCCGACGTAATTTTCTGGCATCT 463 381 249 Antisense
CATCTCTCTTTTTGTACCCATAAAA 139 213 269 Antisense
TGCTGGTTGTGTTCCGTTTGATGAC 482 581 326 Antisense
TGATGACGACATTCGCTTTCCAGTT 520 565 344 Antisense
Sequence Source Affymetrix Proprietary Database