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[174863_at]

Description CEK014C7R_rc /REP_DB=TREMBL Accession /GB=D27336 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 0      6grp_total > 38      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1131
1 2 3 4 range
A 2719
(3)
P 		1857.4
(-2)
P 		1693.4
(-3)
P 		2309.8
(0.6)
P 		1026
B 2486.4
(3)
P 		1644
(-2.6)
P 		1587.7
(-3)
P 		2425
(2.6)
P 		899
C 2075.1
(1)
P 		1939.9
(-0.6)
P 		1734.7
(-3)
P 		2247.1
(3)
P 		512
avr 2426.8
(3) 		1813.8
(-1.9) 		1671.9
(-3) 		2327.3
(2.2) 		755

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1848
1 2 3 4 5 6 range
A 2456.7
(3)
P 		1550.1
(-0.8)
P 		1097.9
(-2.7)
P 		1032.5
(-3)
P 		1779
(0.1)
P 		2071.3
(1.4)
P 		1424
B 2345.4
(3)
P 		1952.3
(1.3)
P 		973.4
(-3)
P 		1534.6
(-0.5)
P 		1264.7
(-1.7)
P 		2195.1
(2.3)
P 		1372
C 2821
(3)
P 		1685.5
(-1.4)
P 		1462
(-2.3)
P 		1272.1
(-3)
P 		1387.2
(-2.6)
P 		1831.9
(-0.8)
P 		1549
avr 2541
(3) 		1729.3
(-0.6) 		1177.8
(-3) 		1279.7
(-2.6) 		1477
(-1.7) 		2032.8
(0.8) 		1363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 652
1 2 3 4 range
A 990
(3)
P 		403.2
(-2.4)
P 		442.7
(-2)
P 		338.1
(-3)
P 		652
B 792.9
(3)
P 		406
(-2.5)
P 		367.9
(-3)
P 		516.8
(-0.9)
P 		425
C 686.9
(3)
P 		557.7
(0.5)
P 		604.6
(1.4)
P 		378.9
(-3)
P 		308
avr 823.3
(3) 		455.6
(-2.4) 		471.7
(-2.1) 		411.3
(-3) 		412

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 809
1 2 3 4 5 6 range
A 452.9
(1.1)
P 		551.3
(3)
P 		239.1
(-3)
P 		261.9
(-2.6)
P 		536.8
(2.7)
P 		504.3
(2.1)
P 		312
B 816.1
(3)
P 		649.8
(1.3)
P 		236.4
(-3)
P 		406.5
(-1.2)
P 		513.8
(-0.1)
P 		818.5
(3)
P 		582
C 1045.6
(3)
P 		514.3
(-1)
P 		372.1
(-2.1)
P 		255.8
(-3)
P 		448.9
(-1.5)
P 		613.2
(-0.3)
P 		790
avr 771.5
(3) 		571.8
(0.5) 		282.5
(-3) 		308.1
(-2.7) 		499.8
(-0.3) 		645.3
(1.5) 		489
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21178
Sequence Type Exemplar sequence
Representative Public ID CEK014C7R NCBI
Target Description CEK014C7R_rc /REP_DB=TREMBL Accession /GB=D27336 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C56G2.1a ENSEMBL cdna:known chromosome:CEL140:III:6353324:6366597:1 gene:C56G2.1 11/11 None
C56G2.1b ENSEMBL cdna:known chromosome:CEL140:III:6362919:6366597:1 gene:C56G2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6366194-6366568(+) 100.0 100.0
Public Domain and Genome References
Ensembl C56G2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM22053 Hypothetical protein C56G2.1a [Caenorhabditis elegans] ref|NP_741190.1| C56G2.1a [Caenorhabditis elegans] sp|Q09285|YQK1_CAEEL Hypothetical protein C56G2.1 in chromosome III 0.0
blast T15871 hypothetical protein C56G2.2 - Caenorhabditis elegans 0.0
blast AAM22054 Hypothetical protein C56G2.1b [Caenorhabditis elegans] ref|NP_741191.1| C56G2.1b [Caenorhabditis elegans] 0.0
blast T15872 hypothetical protein C56G2.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008191 EMBL-EBI Maternal tudor protein 6.4E-31
Pfam IPR004087 EMBL-EBI KH 2.1E-11
Pfam IPR008191 EMBL-EBI Maternal tudor protein 6.4E-31
Pfam IPR004087 EMBL-EBI KH 2.1E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
C56G2.1a 1 108-127
Sequence
Target Sequence 
>C. ELEGANS:174863_AT
tcgtttttatttttgttagcttcatcatcgtttttatccactatctcccatgcctcctct
ccccacaacaaacacagatcgtctagtagcctttcttctctcatttaggtaatttctttt
tattcttttttggttttgagccccatttccctttgagccccgtcagaccattttaccagg
ttcttctacctttcatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTTTTATTTTTGTTAGCTTCAT 495 603 30 Antisense
GTTAGCTTCATCATCGTTTTTATCC 203 447 44 Antisense
AGCTTCATCATCGTTTTTATCCACT 436 79 47 Antisense
TTCATCATCGTTTTTATCCACTATC 217 689 50 Antisense
CTCCCCACAACAAACACAGATCGTC 45 235 88 Antisense
ACAGATCGTCTAGTAGCCTTTCTTC 162 109 103 Antisense
TAGCCTTTCTTCTCTCATTTAGGTA 427 651 116 Antisense
TCTTCTCTCATTTAGGTAATTTCTT 291 617 123 Antisense
CCGTCAGACCATTTTACCAGGTTCT 427 263 189 Antisense
CAGACCATTTTACCAGGTTCTTCTA 49 203 193 Antisense
TACCAGGTTCTTCTACCTTTCATAT 148 651 203 Antisense
Sequence Source Affymetrix Proprietary Database