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[174862_at]

Description CEK076E7R_rc /REP_DB=TREMBL Accession /GB=D64608 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk76e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 30      6grp_total > 28      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1357
1 2 3 4 range
A 1900.6
(3)
P 		561
(-3)
P 		651.8
(-2.6)
P 		1484.3
(1.1)
P 		1340
B 1425.5
(1.1)
P 		675.3
(-2.4)
P 		543.9
(-3)
P 		1830.4
(3)
P 		1287
C 1587.3
(3)
P 		840.1
(-2)
P 		693.5
(-3)
P 		1377.9
(1.6)
P 		894
avr 1637.8
(3) 		692.1
(-2.6) 		629.7
(-3) 		1564.2
(2.6) 		1008

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2017
1 2 3 4 5 6 range
A 940.4
(1.8)
P 		820.6
(0.8)
P 		351
(-3)
P 		480.1
(-2)
P 		699.5
(-0.2)
P 		1089.6
(3)
P 		739
B 1539.9
(3)
P 		946.7
(-0.5)
P 		772.6
(-1.6)
P 		532.2
(-3)
P 		529.4
(-3)
P 		657.7
(-2.2)
P 		1011
C 2339.9
(3)
P 		672.7
(-2)
P 		605.1
(-2.2)
P 		322.7
(-3)
P 		997.8
(-1)
P 		657.4
(-2)
P 		2017
avr 1606.7
(3) 		813.3
(-1.1) 		576.2
(-2.3) 		445
(-3) 		742.2
(-1.5) 		801.6
(-1.2) 		1162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 570
1 2 3 4 range
A 692
(3)
P 		121.8
(-3)
P 		170.4
(-2.5)
P 		217.3
(-2)
P 		570
B 454.6
(3)
P 		166.8
(-2.3)
P 		126
(-3)
P 		390.1
(1.8)
P 		329
C 525.4
(3)
P 		241.5
(-2.8)
P 		241.7
(-2.8)
P 		232.3
(-3)
P 		293
avr 557.3
(3) 		176.7
(-3) 		179.4
(-3) 		279.9
(-1.4) 		381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 802
1 2 3 4 5 6 range
A 173.4
(-0.3)
P 		291.8
(3)
P 		76.4
(-3)
P 		121.8
(-1.7)
P 		211.1
(0.8)
P 		265.3
(2.3)
P 		215
B 535.8
(3)
P 		315.1
(-0.4)
P 		187.6
(-2.3)
P 		141
(-3)
P 		215.1
(-1.9)
P 		245.3
(-1.4)
P 		395
C 867.3
(3)
P 		205.3
(-2)
P 		154
(-2.3)
P 		64.9
(-3)
P 		322.9
(-1.1)
P 		220.1
(-1.8)
P 		802
avr 525.5
(3) 		270.7
(-0.7) 		139.3
(-2.6) 		109.2
(-3) 		249.7
(-1) 		243.6
(-1.1) 		416
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21647
Sequence Type Exemplar sequence
Representative Public ID CEK076E7R NCBI
Target Description CEK076E7R_rc /REP_DB=TREMBL Accession /GB=D64608 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk76e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028244(11), NM_001028241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028244 NCBI Caenorhabditis elegans W02C12.3g (W02C12.3) mRNA, complete cds. 11/11 None
NM_001028241 NCBI Caenorhabditis elegans W02C12.3d (W02C12.3) mRNA, complete cds. 11/11 None
W02C12.3g ENSEMBL cdna:known chromosome:CEL140:IV:4014772:4019036:-1 gene:W02C12.3 11/11 A 
W02C12.3d.1 ENSEMBL cdna:known chromosome:CEL140:IV:4014793:4028121:-1 gene:W02C12.3 11/11 A 
W02C12.3d.2 ENSEMBL cdna:known chromosome:CEL140:IV:4014793:4027057:-1 gene:W02C12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177157 8 2 NM_001028241 174862_at (11), 194161_s_at (11)
NM_001028244 174862_at (11), 194161_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4014818-4015413(-) 100.0 100.0
Public Domain and Genome References
Ensembl W02C12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91678 Hypothetical protein W02C12.3g [Caenorhabditis elegans] ref|NP_001023415.1| W02C12.3g [Caenorhabditis elegans] 0.0
blast AAB37997 Hypothetical protein W02C12.3a [Caenorhabditis elegans] ref|NP_500462.1| W02C12.3a [Caenorhabditis elegans] 0.0
blast AAO91674 Hypothetical protein W02C12.3c [Caenorhabditis elegans] ref|NP_001023411.1| W02C12.3c [Caenorhabditis elegans] 0.0
blast AAO91675 Hypothetical protein W02C12.3d [Caenorhabditis elegans] ref|NP_001023412.1| W02C12.3d [Caenorhabditis elegans] 0.0
blast AAO91676 Hypothetical protein W02C12.3e [Caenorhabditis elegans] ref|NP_001023413.1| W02C12.3e [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Sequence
Target Sequence 
>C. ELEGANS:174862_AT
gcccccacaacactataggcatcacaagtttattttgttctccacccccccgcgtacccc
cattaatttgcccccatacggttttttcactgcaaatttgtagaaccagtccgcagtttt
ttcccgttttgagccagaatcgcaggttattcctcccggaaacctcgacattttctcccg
atcctcttcgtcttcgtctcccaacttcttttctaagattcccattttccctcaagtttt
tccccccagtttattcagcgcgtaacaaaacaaaacaatgtgtgtcggcgggtatttttt
tcaaaaaagaaacattcaaaaaatcccccaaaaaataaatgatgttccctgtttctaggc
ccccctctgattcgattcgactccccacaaccttttgctacaactgaaaaatttcacttt
aatttactctctccagattttttggttttccgatcctctcctccagacacccataggcgc
ttatatatatttgattcgacaaccaattctgtaatttatgtacatatatgacaatgattc
caaaaacacccaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCCCACAACACTATAGGCATCAC 14 287 15 Antisense
TCACAAGTTTATTTTGTTCTCCACC 300 629 36 Antisense
CCCATACGGTTTTTTCACTGCAAAT 452 259 87 Antisense
GCAAATTTGTAGAACCAGTCCGCAG 667 317 106 Antisense
TGTAGAACCAGTCCGCAGTTTTTTC 669 559 113 Antisense
TTTTCCCGTTTTGAGCCAGAATCGC 190 591 133 Antisense
GCCAGAATCGCAGGTTATTCCTCCC 680 279 147 Antisense
CCCCAGTTTATTCAGCGCGTAACAA 51 261 258 Antisense
AAAATAAATGATGTTCCCTGTTTCT 685 131 346 Antisense
CCCACAACCTTTTGCTACAACTGAA 426 257 398 Antisense
CAATGATTCCAAAAACACCCAACAA 438 183 546 Antisense
Sequence Source Affymetrix Proprietary Database