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[174860_at]

Description CEK035C9R_rc /REP_DB=TREMBL Accession /GB=D33739 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk35c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 04      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 03      6grp_total > 24      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4797
1 2 3 4 range
A 5427.2
(3)
P 		2726.5
(-1.7)
P 		2791.9
(-1.6)
P 		1967.6
(-3)
P 		3460
B 6477.7
(3)
P 		4220.9
(-0.1)
P 		3110.3
(-1.6)
P 		2071
(-3)
P 		4407
C 6239.2
(3)
P 		3770.7
(-0.2)
P 		3122.9
(-1.1)
P 		1680.7
(-3)
P 		4559
avr 6048
(3) 		3572.7
(-0.6) 		3008.4
(-1.4) 		1906.4
(-3) 		4142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2874
1 2 3 4 5 6 range
A 4008.1
(2.3)
P 		4315.3
(3)
P 		2470.1
(-1.1)
P 		1877.2
(-2.5)
P 		1972.8
(-2.2)
P 		1632.8
(-3)
P 		2683
B 3950.3
(2.8)
P 		4026.7
(3)
P 		2826.2
(0.2)
P 		2501.6
(-0.6)
P 		1810
(-2.2)
P 		1473
(-3)
P 		2554
C 3803.8
(3)
P 		3544.5
(2.3)
P 		3159.1
(1.4)
P 		1884.5
(-1.9)
P 		1918.4
(-1.8)
P 		1440.9
(-3)
P 		2363
avr 3920.7
(2.9) 		3962.2
(3) 		2818.5
(0.2) 		2087.8
(-1.6) 		1900.4
(-2.1) 		1515.6
(-3) 		2447
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1782
1 2 3 4 range
A 1976.1
(3)
P 		591.8
(-1.9)
P 		729.9
(-1.4)
P 		288
(-3)
P 		1688
B 2065.7
(3)
P 		1042.5
(-0.8)
P 		720.7
(-2)
P 		441.3
(-3)
P 		1624
C 2065.3
(3)
P 		1084.1
(-0.3)
P 		1088.4
(-0.3)
P 		283.4
(-3)
P 		1782
avr 2035.7
(3) 		906.1
(-1) 		846.3
(-1.2) 		337.6
(-3) 		1698

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1156
1 2 3 4 5 6 range
A 738.9
(-1.2)
P 		1534.7
(3)
P 		537.9
(-2.3)
P 		476.1
(-2.6)
P 		595.3
(-2)
P 		397.5
(-3)
P 		1137
B 1374.5
(3)
P 		1340.3
(2.8)
P 		686.3
(-2)
P 		662.6
(-2.2)
P 		735.4
(-1.6)
P 		549.3
(-3)
P 		825
C 1409.9
(3)
P 		1081.5
(1.1)
P 		804
(-0.5)
P 		379
(-3)
P 		620.8
(-1.6)
P 		482.3
(-2.4)
P 		1031
avr 1174.4
(2) 		1318.8
(3) 		676.1
(-1.6) 		505.9
(-2.8) 		650.5
(-1.8) 		476.4
(-3) 		842
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21905
Sequence Type Exemplar sequence
Representative Public ID CEK035C9R NCBI
Target Description CEK035C9R_rc /REP_DB=TREMBL Accession /GB=D33739 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk35c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182361 NCBI Caenorhabditis elegans M04G12.4b (M04G12.4) mRNA, complete cds. 11/11 None
M04G12.4b.3 ENSEMBL cdna:known chromosome:CEL140:V:13388665:13393623:-1 gene:M04G12.4 11/11 None
M04G12.4b.2 ENSEMBL cdna:known chromosome:CEL140:V:13388665:13392082:-1 gene:M04G12.4 11/11 A 
M04G12.4b.1 ENSEMBL cdna:known chromosome:CEL140:V:13388665:13393985:-1 gene:M04G12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179819 2 1 NM_182361 174860_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13388682-13389075(-) 100.0 100.0
Public Domain and Genome References
Ensembl M04G12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03211 Hypothetical protein M04G12.4a [Caenorhabditis elegans] emb|CAD56587.2| Hypothetical protein M04G12.4a [Caenorhabditis elegans] ref|NP_506320.3| M04G12.4a [Caenorhabditis elegans] 0.0
blast CAD56592 Hypothetical protein M04G12.4b [Caenorhabditis elegans] ref|NP_872161.2| M04G12.4b [Caenorhabditis elegans] 0.0
blast CAE62607 Hypothetical protein CBG06725 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174860_AT
tgctcatgacgtttcttttgccacgtcatctttcatctcttctgttcatttcttgctcta
atctttctctcccccaacgatgaccagtgccatgttttgtgattagcaacaaaccgtcta
gttagcttctcagagatttttatgtttagaaaaccccctaccattaccaattgtttgtat
ctctcgctaggtccacacacatttcacaaaatcctcttgttttctcccggcttatttcct
tgttccctttattctttctttcctcttcaaatttctactttttatctactcaggtgctac
tctaaatatataatttttgccaacatccttatccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCATGACGTTTCTTTTGCCACG 373 581 13 Antisense
TGTTCATTTCTTGCTCTAATCTTTC 155 563 55 Antisense
CCCAACGATGACCAGTGCCATGTTT 471 257 85 Antisense
GACCAGTGCCATGTTTTGTGATTAG 61 385 94 Antisense
CAAACCGTCTAGTTAGCTTCTCAGA 529 191 122 Antisense
CAATTGTTTGTATCTCTCGCTAGGT 50 181 180 Antisense
CTAGGTCCACACACATTTCACAAAA 117 225 199 Antisense
TCACAAAATCCTCTTGTTTTCTCCC 637 627 216 Antisense
TTCTACTTTTTATCTACTCAGGTGC 394 689 285 Antisense
ATCTACTCAGGTGCTACTCTAAATA 538 29 296 Antisense
TTTTTGCCAACATCCTTATCCACAA 599 673 326 Antisense
Sequence Source Affymetrix Proprietary Database