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[174859_at] CAP-binding protein

Description CEK025B1R_rc /REP_DB=TREMBL Accession /GB=D33022 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25b1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_high_8_8 > 58      6grp_highest_nonorm > 50      6grp_total > 02      4grp_total > 61      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 687.8
(3)
P 		378.7
(-2.3)
P 		608.7
(1.7)
P 		334.8
(-3)
A 		353
B 657.1
(3)
P 		445.8
(-0.6)
P 		445.5
(-0.6)
P 		308.3
(-3)
P 		349
C 573.9
(0.8)
P 		768.7
(3)
P 		695.5
(2.2)
P 		234.6
(-3)
P 		534
avr 639.6
(3) 		531.1
(1.1) 		583.2
(2) 		292.6
(-3) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 485
1 2 3 4 5 6 range
A 417.9
(-0.3)
P 		596.9
(3)
P 		274.9
(-3)
P 		313.6
(-2.3)
P 		484.1
(0.9)
P 		282.1
(-2.9)
P 		322
B 760.2
(3)
P 		612.8
(1)
P 		319.7
(-3)
P 		577.9
(0.5)
P 		603.7
(0.9)
P 		540.7
(0)
P 		441
C 473.3
(-0.1)
P 		601.2
(2.1)
P 		414.6
(-1.1)
P 		655.2
(3)
P 		303.1
(-3)
P 		433.7
(-0.8)
P 		352
avr 550.5
(1.8) 		603.6
(3) 		336.4
(-3) 		515.6
(1) 		463.6
(-0.1) 		418.8
(-1.1) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 250.4
(3)
P 		82.2
(-2)
P 		159.1
(0.3)
P 		49
(-3)
A 		201
B 209.5
(3)
P 		110.1
(-1.1)
P 		103.2
(-1.4)
P 		65.7
(-3)
P 		144
C 190
(1.4)
P 		221
(2.4)
P 		242.4
(3)
P 		39.6
(-3)
P 		203
avr 216.6
(3) 		137.8
(0.1) 		168.2
(1.2) 		51.4
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 77
(-2.3)
P 		212.3
(3)
P 		59.9
(-3)
P 		79.5
(-2.2)
P 		146.1
(0.4)
P 		68.7
(-2.7)
P 		152
B 264.5
(3)
P 		204
(1.1)
P 		77.6
(-3)
P 		153.1
(-0.6)
P 		245.3
(2.4)
P 		201.6
(1)
P 		187
C 175.4
(2.4)
P 		183.4
(3)
P 		105.5
(-2.5)
P 		131.8
(-0.6)
P 		98.1
(-3)
P 		145.2
(0.3)
P 		85
avr 172.3
(1.6) 		199.9
(3) 		81
(-3) 		121.5
(-1) 		163.2
(1.1) 		138.5
(-0.1) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20417
Sequence Type Exemplar sequence
Representative Public ID CEK025B1R NCBI
Target Description CEK025B1R_rc /REP_DB=TREMBL Accession /GB=D33022 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059449 NCBI Caenorhabditis elegans F37E3.1 (F37E3.1) mRNA, complete cds. 11/11 None
F37E3.1 ENSEMBL cdna:known chromosome:CEL140:I:6430154:6433929:1 gene:F37E3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6433387-6433832(+) 96.18 100.0
Public Domain and Genome References
Gene Title CAP-binding protein
Ensembl F37E3.1
Entrez Gene 172345 Entrez gene
SwissProt O01763 EMBL-EBI
WormBase CE29793 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19885_AT mRNA cap-binding protein (ABH1) at
ATH1-121501:263727_AT mRNA cap-binding protein (ABH1) at
CANINE_2:CFAAFFX.4551.1.S1_AT similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa subunit) (CBP80) cfa
DROSOPHILA_2:1636071_A_AT cap binding protein 80 dm
DROSOPHILA_2:1623101_AT cap binding protein 80 dm
DROSGENOME1:154564_AT cap binding protein 80 dm
CHICKEN:GGAAFFX.12391.1.S1_S_AT nuclear cap binding protein subunit 1, 80kDa gga
CHICKEN:GGA.2984.1.S1_AT Similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa subunit) (CBP80) gga
HG-U133_PLUS_2:209520_S_AT nuclear cap binding protein subunit 1, 80kDa hs
HG-U133A:209520_S_AT nuclear cap binding protein subunit 1, 80kDa hs
HG-FOCUS:209520_S_AT nuclear cap binding protein subunit 1, 80kDa hs
HG-U133A_2:209520_S_AT nuclear cap binding protein subunit 1, 80kDa hs
HU35KSUBA:D32002_S_AT nuclear cap binding protein subunit 1, 80kDa hs
HUGENEFL:D32002_S_AT nuclear cap binding protein subunit 1, 80kDa hs
U133_X3P:G12655186_3P_A_AT nuclear cap binding protein subunit 1, 80kDa hs
U133_X3P:HS.89563.0.S2_3P_X_AT nuclear cap binding protein subunit 1, 80kDa hs
U133_X3P:HS.89563.0.S2_3P_AT nuclear cap binding protein subunit 1, 80kDa hs
HG-U133A_2:209519_AT nuclear cap binding protein subunit 1, 80kDa hs
HG-U133_PLUS_2:209519_AT nuclear cap binding protein subunit 1, 80kDa hs
HG-U133A:209519_AT nuclear cap binding protein subunit 1, 80kDa hs
HG-U95AV2:37987_AT nuclear cap binding protein subunit 1, 80kDa hs
HG-U133_PLUS_2:232967_AT Nuclear cap binding protein subunit 1, 80kDa hs
HG-U133B:232967_AT Nuclear cap binding protein subunit 1, 80kDa hs
U133_X3P:HS.288867.0.A1_3P_AT Nuclear cap binding protein subunit 1, 80kDa hs
HG-U95E:80741_AT Nuclear cap binding protein subunit 1, 80kDa hs
HG-U95E:80743_G_AT Nuclear cap binding protein subunit 1, 80kDa hs
HG-U133_PLUS_2:236197_AT Nuclear cap binding protein subunit 1, 80kDa hs
HG-U133B:236197_AT Nuclear cap binding protein subunit 1, 80kDa hs
HG-U95B:42950_AT Nuclear cap binding protein subunit 1, 80kDa hs
HG-U95C:53692_AT Nuclear cap binding protein subunit 1, 80kDa hs
HG-U95C:61205_AT Nuclear cap binding protein subunit 1, 80kDa hs
HG-U95E:73655_AT Nuclear cap binding protein subunit 1, 80kDa hs
HU35KSUBC:RC_AA436720_AT Nuclear cap binding protein subunit 1, 80kDa hs
HU35KSUBD:RC_AA427950_AT Nuclear cap binding protein subunit 1, 80kDa hs
HU35KSUBD:RC_AA477484_AT Nuclear cap binding protein subunit 1, 80kDa hs
U133_X3P:HS.121622.0.A1_3P_AT Nuclear cap binding protein subunit 1, 80kDa hs
MG-U74AV2:102400_AT expressed sequence AU014645 mm
MG-U74BV2:112397_AT expressed sequence AU014645 mm
MOE430A:1433663_S_AT expressed sequence AU014645 mm
MOUSE430A_2:1433663_S_AT expressed sequence AU014645 mm
MOUSE430_2:1433663_S_AT expressed sequence AU014645 mm
MU19KSUBA:TC15281_AT PREDICTED: similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa subunit) (CBP80) [Mus musculus], mRNA sequence mm
MU19KSUBA:TC15460_AT PREDICTED: similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa subunit) (CBP80) [Mus musculus], mRNA sequence mm
MU19KSUBC:TC35371_AT PREDICTED: similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa subunit) (CBP80) [Mus musculus], mRNA sequence mm
RG-U34B:RC_AI029428_S_AT nuclear cap binding protein subunit 1, 80kDa (predicted) rn
RG-U34C:RC_AI235047_AT nuclear cap binding protein subunit 1, 80kDa (predicted) rn
RAE230A:1373978_AT nuclear cap binding protein subunit 1, 80kDa (predicted) rn
RAT230_2:1373978_AT nuclear cap binding protein subunit 1, 80kDa (predicted) rn
RAE230B:1378191_AT nuclear cap binding protein subunit 1, 80kDa (predicted) rn
RAT230_2:1378191_AT nuclear cap binding protein subunit 1, 80kDa (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54133 Hypothetical protein F37E3.1 [Caenorhabditis elegans] ref|NP_491850.2| F37E3.1 [Caenorhabditis elegans] 0.0
blast CAE67185 Hypothetical protein CBG12621 [Caenorhabditis briggsae] 0.0
blast AAH75600 Nuclear cap binding protein subunit 1, 80kDa [Xenopus tropicalis] ref|NP_001006788.1| nuclear cap binding protein subunit 1, 80kDa [Xenopus tropicalis] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR003890 EMBL-EBI Initiation factor eIF-4 gamma, middle 8.4E-47
Sequence
Target Sequence 
>C. ELEGANS:174859_AT
tcttcgtctttaaatgagtcatatactttaatcttgtccaatttcaaatttcctgttatt
tttctcaaccaatctcttcaaaatctctacgatcccagtccgggttcatcataaatatgg
actttaagtccccggaaccatgtttattttatcaatattaaactcccaatctccgtttgt
ttcttgttgtgtttcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGTCTTTAAATGAGTCATATA 547 617 125 Antisense
GAGTCATATACTTTAATCTTGTCCA 395 399 140 Antisense
TAATCTTGTCCAATTTCAAATTTCC 496 635 153 Antisense
GTTATTTTTCTCAACCAATCTCTTC 479 447 179 Antisense
CTTCAAAATCTCTACGATCCCAGTC 299 221 200 Antisense
GATCCCAGTCCGGGTTCATCATAAA 473 417 215 Antisense
TGGACTTTAAGTCCCCGGAACCATG 179 503 242 Antisense
CGGAACCATGTTTATTTTATCAATA 638 241 257 Antisense
TCAATATTAAACTCCCAATCTCCGT 175 633 276 Antisense
CCAATCTCCGTTTGTTTCTTGTTGT 55 277 290 Antisense
CGTTTGTTTCTTGTTGTGTTTCATT 8 247 298 Antisense
Sequence Source Affymetrix Proprietary Database