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[174858_at]

Description CEK079H2R_rc /REP_DB=TREMBL Accession /GB=D71677 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk79h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 75      6grp_total > 29      4grp_total > 59      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 1141.1
(2.2)
P 		1184.1
(3)
P 		1005.5
(-0.2)
P 		848.4
(-3)
P 		336
B 1116.6
(1.5)
P 		855.8
(-3)
P 		1065.8
(0.6)
P 		1203.8
(3)
P 		348
C 893.7
(-3)
P 		1170.1
(3)
P 		1130.1
(2.1)
P 		1016.3
(-0.3)
P 		276
avr 1050.5
(0.5) 		1070
(3) 		1067.1
(2.6) 		1022.8
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 858
1 2 3 4 5 6 range
A 944
(3)
P 		923.5
(2.4)
P 		828.4
(-0.2)
P 		726.5
(-3)
P 		910.9
(2.1)
P 		798.3
(-1)
P 		218
B 1121.2
(3)
P 		775.9
(-1.2)
P 		623
(-3)
P 		882.9
(0.1)
P 		946.9
(0.9)
P 		759.4
(-1.4)
P 		498
C 1480.7
(3)
P 		887.5
(-1.4)
P 		840.5
(-1.7)
P 		664.6
(-3)
P 		1047.2
(-0.2)
P 		690.7
(-2.8)
P 		816
avr 1182
(3) 		862.3
(-1.4) 		764
(-2.8) 		758
(-2.9) 		968.3
(0) 		749.5
(-3) 		433
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 415.5
(3)
P 		257
(-0.3)
P 		262.9
(-0.1)
P 		124.2
(-3)
P 		291
B 356.1
(3)
P 		211.4
(-3)
P 		247
(-1.5)
P 		256.5
(-1.1)
P 		145
C 295.8
(0.4)
P 		336.4
(1.4)
P 		393.9
(3)
P 		171.4
(-3)
P 		223
avr 355.8
(3) 		268.3
(-0.1) 		301.3
(1.1) 		184
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 174
(-3)
P 		328.4
(3)
P 		180.4
(-2.8)
P 		184.3
(-2.6)
P 		274.9
(0.9)
P 		194.4
(-2.2)
P 		154
B 390.1
(3)
P 		258.3
(-0.3)
P 		151.3
(-3)
P 		233.9
(-0.9)
P 		384.7
(2.9)
P 		283.2
(0.3)
P 		239
C 548.8
(3)
P 		270.8
(-1)
P 		213.9
(-1.8)
P 		133.6
(-3)
P 		338.8
(-0)
P 		231.2
(-1.6)
P 		415
avr 371
(3) 		285.8
(0.3) 		181.9
(-3) 		183.9
(-2.9) 		332.8
(1.8) 		236.3
(-1.3) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174858_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20089
Sequence Type Exemplar sequence
Representative Public ID CEK079H2R NCBI
Target Description CEK079H2R_rc /REP_DB=TREMBL Accession /GB=D71677 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk79h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058662 NCBI Caenorhabditis elegans Y71F9AL.9 (Y71F9AL.9) mRNA, complete cds. 11/11 None
Y71F9AL.9.1 ENSEMBL cdna:known chromosome:CEL140:I:2876931:2878514:1 gene:Y71F9AL.9 11/11 None
Y71F9AL.9.2 ENSEMBL cdna:known chromosome:CEL140:I:2876933:2878514:1 gene:Y71F9AL.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005903 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2878123-2878498(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9AL.9
Entrez Gene 171854 Entrez gene
SwissProt Q9N4I3 EMBL-EBI
WormBase CE22858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35998 Hypothetical protein Y71F9AL.9 [Caenorhabditis elegans] ref|NP_491063.1| Y71F9AL.9 [Caenorhabditis elegans] 1.0E-121
blast CAE60591 Hypothetical protein CBG04227 [Caenorhabditis briggsae] 6.0E-95
Sequence
Target Sequence 
>C. ELEGANS:174858_AT
atggtactccggcaaagtgcatctttatttttactgtgatttgatttgataattatagta
ttgaaagtgaatgaccctattcattatgcttgtaattataatccattataacttattccg
tttctttcctttccccccttggtttcgcttaattttcctgttcttcccttcatccccaac
atttttcatttttttatcctgcaccccccttaaatttatacatacacacacatatatata
tatcacacaagaggccttatttgttttatgcgggagacatcagaactttttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTACTCCGGCAAAGTGCATCTT 294 49 15 Antisense
AAAGTGCATCTTTATTTTTACTGTG 91 121 28 Antisense
ATTTTTACTGTGATTTGATTTGATA 395 15 41 Antisense
AGTATTGAAAGTGAATGACCCTATT 9 63 71 Antisense
TGACCCTATTCATTATGCTTGTAAT 454 569 86 Antisense
ATCCATTATAACTTATTCCGTTTCT 548 37 115 Antisense
TGGTTTCGCTTAATTTTCCTGTTCT 510 551 154 Antisense
TGCACCCCCCTTAAATTTATACATA 536 567 214 Antisense
TATATATCACACAAGAGGCCTTATT 329 661 251 Antisense
GAGGCCTTATTTGTTTTATGCGGGA 217 381 265 Antisense
GCGGGAGACATCAGAACTTTTTGTT 76 293 284 Antisense
Sequence Source Affymetrix Proprietary Database