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[174857_at]

Description CEK058C9R_rc /REP_DB=TREMBL Accession /GB=D65507 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk58c9 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 12.1
(-2.2)
A 		1.9
(-3)
A 		13.9
(-2)
A 		74.1
(3)
A 		72
B 22.9
(1.3)
A 		26.9
(3)
A 		12.5
(-3)
A 		19
(-0.3)
A 		14
C 12.1
(-3)
A 		38.5
(-1.1)
A 		14.8
(-2.8)
A 		96
(3)
P 		84
avr 15.7
(-2.8) 		22.4
(-1.9) 		13.7
(-3) 		63
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 4.6
(-2.8)
A 		13.7
(-2)
A 		7
(-2.6)
A 		2.5
(-3)
A 		62
(2.5)
M 		66.9
(3)
P 		64
B 2.7
(-2.9)
A 		1.8
(-3)
A 		10.9
(-2.3)
A 		11.2
(-2.3)
A 		55.2
(1.1)
P 		79.4
(3)
P 		78
C 9.6
(-2.6)
A 		10.5
(-2.5)
A 		8.3
(-2.7)
A 		4.8
(-3)
A 		67.8
(2.5)
P 		73.4
(3)
P 		69
avr 5.6
(-3) 		8.7
(-2.7) 		8.7
(-2.7) 		6.2
(-2.9) 		61.7
(2) 		73.2
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.4
(-0.7)
A 		0.4
(-3)
A 		3.6
(-1.2)
A 		10.9
(3)
A 		11
B 7.3
(3)
A 		6.7
(2.2)
A 		2.9
(-3)
A 		4
(-1.5)
A 		4
C 4
(-3)
A 		11.1
(0.5)
A 		5.1
(-2.5)
A 		16.2
(3)
P 		12
avr 5.2
(-1.8) 		6.1
(-1) 		3.9
(-3) 		10.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		4.9
(-1.6)
A 		1.5
(-2.7)
A 		0.6
(-3)
A 		18.7
(3)
M 		16.3
(2.2)
P 		18
B 0.9
(-2.9)
A 		0.6
(-3)
A 		2.6
(-2.6)
A 		3
(-2.5)
A 		22.4
(1.5)
P 		29.6
(3)
P 		29
C 3.5
(-2.4)
A 		3.2
(-2.4)
A 		2.1
(-2.7)
A 		1
(-3)
A 		21.9
(2.3)
P 		24.6
(3)
P 		24
avr 1.7
(-2.9) 		2.9
(-2.6) 		2.1
(-2.8) 		1.5
(-3) 		21
(2.3) 		23.5
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174857_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22404
Sequence Type Exemplar sequence
Representative Public ID CEK058C9R NCBI
Target Description CEK058C9R_rc /REP_DB=TREMBL Accession /GB=D65507 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk58c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK058C9R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK058C9R CEK058C9R_rc /REP_DB=TREMBL Accession /GB=D65507 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk58c9 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075751 11/11 Negative Strand Matching Probes A 
SNAP00000034733 11/11 Negative Strand Matching Probes None
GENEFINDER00000034742 11/11 Negative Strand Matching Probes None
T04G9.7 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:770963-771764(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174857_AT
gaagcaaatcgctggattgttccatgtacttcataacgctggatttgaaagtacggaact
gagttgaccacatgcggaatgtctcggctgatctctttgaacttttgcaagcgacgacaa
cgtatccatgcttcccatcacttcgtccttcttaacaggcatatcaggcatttcatgact
ttcatgatcctcgtgctcttctgaagatggagtagtagtcaatgcttgttggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCAAATCGCTGGATTGTTCCAT 534 341 17 Antisense
GATTGTTCCATGTACTTCATAACGC 77 435 31 Antisense
CGGAACTGAGTTGACCACATGCGGA 306 243 70 Antisense
ACATGCGGAATGTCTCGGCTGATCT 192 107 86 Antisense
CGGCTGATCTCTTTGAACTTTTGCA 36 243 101 Antisense
AGCGACGACAACGTATCCATGCTTC 492 81 126 Antisense
TCACTTCGTCCTTCTTAACAGGCAT 602 625 154 Antisense
GGCATATCAGGCATTTCATGACTTT 387 537 174 Antisense
TCATGACTTTCATGATCCTCGTGCT 262 623 189 Antisense
ATCCTCGTGCTCTTCTGAAGATGGA 580 39 203 Antisense
GGAGTAGTAGTCAATGCTTGTTGGC 306 517 225 Antisense
Sequence Source Affymetrix Proprietary Database