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[174856_at]

Description CEK078D4R_rc /REP_DB=TREMBL Accession /GB=D71578 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk78d4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 82      6grp_total > 48      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 437.8
(3)
P 		253.8
(-3)
P 		324.3
(-0.7)
P 		257.5
(-2.9)
P 		184
B 434.4
(3)
P 		274.9
(-3)
P 		303.2
(-1.9)
P 		356.5
(0.1)
P 		160
C 410
(3)
P 		302.7
(-2.1)
P 		283.5
(-3)
P 		349.5
(0.1)
P 		127
avr 427.4
(3) 		277.1
(-3) 		303.7
(-1.9) 		321.2
(-1.2) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 542
(3)
P 		330.2
(-1.4)
P 		253.8
(-3)
P 		345.3
(-1.1)
P 		450.7
(1.1)
P 		480.5
(1.7)
P 		288
B 524.1
(2)
P 		289.7
(-3)
P 		326
(-2.2)
P 		367.9
(-1.3)
P 		325.9
(-2.2)
P 		573.6
(3)
P 		284
C 458.7
(3)
P 		294.2
(-3)
P 		331
(-1.7)
P 		425.7
(1.8)
P 		305.7
(-2.6)
P 		427
(1.8)
P 		165
avr 508.3
(3) 		304.7
(-3) 		303.6
(-3) 		379.6
(-0.8) 		360.8
(-1.3) 		493.7
(2.6) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 159.4
(3)
P 		55.1
(-2.1)
P 		84.8
(-0.7)
P 		37.7
(-3)
P 		122
B 138.5
(3)
P 		67.9
(-3)
P 		70.3
(-2.8)
P 		76
(-2.3)
P 		71
C 135.7
(3)
P 		87
(-0.8)
P 		98.8
(0.1)
P 		58.9
(-3)
P 		77
avr 144.5
(3) 		70
(-2.1) 		84.6
(-1.1) 		57.5
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 99.9
(0.3)
P 		117.5
(1.6)
P 		55.3
(-3)
P 		87.6
(-0.6)
P 		136
(3)
P 		117
(1.6)
P 		81
B 182.4
(1.6)
P 		96.4
(-2.2)
P 		79.2
(-3)
P 		97.5
(-2.2)
P 		132.4
(-0.6)
P 		213.9
(3)
P 		135
C 170
(3)
P 		89.8
(-2.6)
P 		84.2
(-3)
P 		85.6
(-2.9)
P 		98.9
(-2)
P 		142.9
(1.1)
P 		86
avr 150.8
(2.5) 		101.2
(-1) 		72.9
(-3) 		90.2
(-1.8) 		122.4
(0.5) 		157.9
(3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20912
Sequence Type Exemplar sequence
Representative Public ID CEK078D4R NCBI
Target Description CEK078D4R_rc /REP_DB=TREMBL Accession /GB=D71578 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk78d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066457 NCBI Caenorhabditis elegans ZK353.1a (ZK353.1) mRNA, complete cds. 11/11 None
ZK353.1a ENSEMBL cdna:known chromosome:CEL140:III:8405789:8409317:1 gene:ZK353.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176188 2 1 NM_066457 174856_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8408786-8409273(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK353.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68920 Hypothetical protein ZK353.1a [Caenorhabditis elegans] ref|NP_498858.2| ZK353.1a [Caenorhabditis elegans] 0.0
blast AAP68921 Hypothetical protein ZK353.1b [Caenorhabditis elegans] ref|NP_498857.2| ZK353.1b [Caenorhabditis elegans] sp|P34624|YOJ1_CAEEL Hypothetical protein ZK353.1 in chromosome III 0.0
blast CAE71262 Hypothetical protein CBG18144 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 4.6E-8
Sequence
Target Sequence 
>C. ELEGANS:174856_AT
taatgtttcttttgtatgtcttgtcaactgttaatgtttttgcttcttcctttgctattc
tcttaattatttctctgcacactatcgttttatcttgaatacggctaaattcgtttcctt
tgacaaaccccatcttgttttccttctcaaattgcttgtattttcaaaaaaagaagtttg
ttggctatttaattgactcaatacctatctcagaaaatctcattttctctttctttgttt
tctttcgatccctccagtattacaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGTTTCTTTTGTATGTCTTGTC 366 637 183 Antisense
GTCAACTGTTAATGTTTTTGCTTCT 229 463 205 Antisense
TCTTCCTTTGCTATTCTCTTAATTA 119 619 227 Antisense
CTCTTAATTATTTCTCTGCACACTA 202 231 242 Antisense
CTCTGCACACTATCGTTTTATCTTG 10 233 255 Antisense
TGAATACGGCTAAATTCGTTTCCTT 604 571 278 Antisense
TTGACAAACCCCATCTTGTTTTCCT 289 681 302 Antisense
CTTGTTTTCCTTCTCAAATTGCTTG 625 217 316 Antisense
GTTTGTTGGCTATTTAATTGACTCA 412 449 358 Antisense
AATTGACTCAATACCTATCTCAGAA 248 179 373 Antisense
TTTCGATCCCTCCAGTATTACAAAA 138 671 425 Antisense
Sequence Source Affymetrix Proprietary Database