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[174855_at]

Description CEK025G2R_rc /REP_DB=TREMBL Accession /GB=D33067 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 05      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 10      6grp_total > 05      4grp_total > 54      6grp_cgc > 41      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1163
1 2 3 4 range
A 1892.4
(3)
P 		729.9
(-3)
P 		1149.5
(-0.8)
P 		1053.3
(-1.3)
P 		1163
B 1503.3
(3)
P 		1205.2
(-0.5)
P 		1066.2
(-2.1)
P 		987.9
(-3)
P 		515
C 1594.1
(3)
P 		1379.1
(1.5)
P 		1228.6
(0.4)
P 		737.2
(-3)
P 		857
avr 1663.3
(3) 		1104.7
(-1.5) 		1148.1
(-1.2) 		926.1
(-3) 		737

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 920
1 2 3 4 5 6 range
A 1816.7
(3)
P 		1663.3
(1.8)
P 		1413.6
(-0)
P 		1296.7
(-0.9)
P 		1572.1
(1.2)
P 		1017.3
(-3)
P 		799
B 1811.2
(3)
P 		1552.7
(1.1)
P 		1029
(-2.7)
P 		1491.4
(0.7)
P 		1420.7
(0.2)
P 		980.6
(-3)
P 		831
C 1900.7
(3)
P 		1460.2
(-0.4)
P 		1392.8
(-0.9)
P 		1231.5
(-2.1)
P 		1239.7
(-2)
P 		1115.1
(-3)
P 		786
avr 1842.9
(3) 		1558.7
(0.9) 		1278.5
(-1.2) 		1339.9
(-0.7) 		1410.8
(-0.2) 		1037.7
(-3) 		805
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 565
1 2 3 4 range
A 689
(3)
P 		158.4
(-3)
P 		300.5
(-1.4)
P 		154.2
(-3)
P 		535
B 479.4
(3)
P 		297.7
(-1.1)
P 		247.1
(-2.2)
P 		210.5
(-3)
P 		269
C 527.7
(3)
P 		396.5
(1)
P 		428.2
(1.5)
P 		124.3
(-3)
P 		403
avr 565.4
(3) 		284.2
(-1.2) 		325.3
(-0.6) 		163
(-3) 		402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 334.9
(-1.5)
P 		591.6
(3)
P 		307.9
(-1.9)
P 		328.9
(-1.6)
P 		474.4
(1)
P 		247.7
(-3)
P 		344
B 630.2
(3)
P 		516.8
(1.2)
P 		249.9
(-3)
P 		395
(-0.7)
P 		577.2
(2.2)
P 		365.7
(-1.2)
P 		380
C 704.5
(3)
P 		445.5
(-0.4)
P 		354.5
(-1.6)
P 		247.6
(-3)
P 		401.1
(-1)
P 		373.3
(-1.3)
P 		457
avr 556.5
(3) 		518
(2.1) 		304.1
(-3) 		323.8
(-2.5) 		484.2
(1.3) 		328.9
(-2.4) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20423
Sequence Type Exemplar sequence
Representative Public ID CEK025G2R NCBI
Target Description CEK025G2R_rc /REP_DB=TREMBL Accession /GB=D33067 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026239 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
F25H5.1f ENSEMBL cdna:known chromosome:CEL140:I:9189942:9218461:-1 gene:F25H5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565712 6 1 NM_001026236 180879_at (11), 181484_s_at (11)
NM_001026239 174855_at (11), 180879_at (11), 181484_s_at (11), 193324_at (11)
NM_001030056 180879_at (11), 181484_s_at (11)
NM_001030057 181483_at (11), 181484_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9189898-9190266(-) 86.14 100.0
Public Domain and Genome References
Ensembl F25H5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAJ30229 Hypothetical protein F25H5.1f [Caenorhabditis elegans] emb|CAI46551.1| Hypothetical protein F25H5.1f [Caenorhabditis elegans] ref|NP_001021410.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAB02980 Hypothetical protein F25H5.1a [Caenorhabditis elegans] emb|CAI46552.1| Hypothetical protein F25H5.1a [Caenorhabditis elegans] ref|NP_001025227.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAJ30228 Hypothetical protein F25H5.1c [Caenorhabditis elegans] emb|CAI46550.1| Hypothetical protein F25H5.1c [Caenorhabditis elegans] ref|NP_001021407.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-10
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Sequence
Target Sequence 
>C. ELEGANS:174855_AT
gtattttctctatttctgtgtttctacattagatgtatatagtcccaccttttattgcat
aaacttttttcggttgtttccattaaactcgcatttttctgccttttgctttcgtgtctt
cattttattatttttaattttccttatttttgcgacgagaccaatgctcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTTTCTCTATTTCTGTGTTTCT 407 453 70 Antisense
CTATTTCTGTGTTTCTACATTAGAT 144 225 79 Antisense
ATTAGATGTATATAGTCCCACCTTT 29 13 97 Antisense
GTATATAGTCCCACCTTTTATTGCA 253 451 104 Antisense
ATAGTCCCACCTTTTATTGCATAAA 263 21 108 Antisense
TATTGCATAAACTTTTTTCGGTTGT 26 665 122 Antisense
TTCGGTTGTTTCCATTAAACTCGCA 365 683 138 Antisense
CATTAAACTCGCATTTTTCTGCCTT 119 215 150 Antisense
TGCTTTCGTGTCTTCATTTTATTAT 505 579 176 Antisense
TAATTTTCCTTATTTTTGCGACGAG 193 635 204 Antisense
TTTTGCGACGAGACCAATGCTCCTC 466 677 217 Antisense
Sequence Source Affymetrix Proprietary Database