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[174850_at] casein Kinase I

Description CEK015E6R_rc /REP_DB=TREMBL Accession /GB=D27618 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15e6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 67      6grp_total > 38      4grp_total > 04      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2044
1 2 3 4 range
A 2276.2
(-1.5)
P 		1974.2
(-2.9)
P 		1950.7
(-3)
P 		3215.4
(3)
P 		1265
B 2464.2
(-0.8)
P 		1718.8
(-3)
P 		1946.1
(-2.3)
P 		3762.8
(3)
P 		2044
C 2075.6
(-2.3)
P 		1877.8
(-3)
P 		1914
(-2.9)
P 		3603.6
(3)
P 		1726
avr 2272
(-1.5) 		1856.9
(-3) 		1936.9
(-2.7) 		3527.3
(3) 		1670

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 892
1 2 3 4 5 6 range
A 2335.3
(3)
P 		2007.2
(0.4)
P 		1643.6
(-2.4)
P 		1571.9
(-3)
P 		2026.7
(0.6)
P 		1954.4
(0)
P 		763
B 2311.2
(3)
P 		2214
(1.9)
P 		1789.1
(-3)
P 		1917.9
(-1.5)
P 		1787.1
(-3)
P 		2049.9
(0)
P 		524
C 2324.8
(3)
P 		2082.1
(1.3)
P 		1443.3
(-3)
P 		1670.2
(-1.5)
P 		1850.6
(-0.2)
P 		1985.2
(0.7)
P 		882
avr 2323.8
(3) 		2101.1
(1.1) 		1625.3
(-3) 		1720
(-2.2) 		1888.1
(-0.7) 		1996.5
(0.2) 		699
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 828.8
(3)
P 		428.5
(-3)
P 		509.9
(-1.8)
P 		470.7
(-2.4)
P 		400
B 785.8
(2.7)
P 		424.5
(-3)
P 		451
(-2.6)
P 		801.9
(3)
P 		377
C 687.1
(3)
P 		539.9
(-3)
P 		667.1
(2.2)
P 		607.6
(-0.2)
P 		147
avr 767.2
(3) 		464.3
(-3) 		542.7
(-1.4) 		626.7
(0.2) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 430.5
(-1.8)
P 		713.8
(3)
P 		357.9
(-3)
P 		398.7
(-2.3)
P 		611.6
(1.3)
P 		475.8
(-1)
P 		356
B 804.2
(3)
P 		737
(1.9)
P 		434.4
(-3)
P 		508
(-1.8)
P 		726.1
(1.7)
P 		764.4
(2.4)
P 		370
C 861.7
(3)
P 		635.3
(0.4)
P 		367.3
(-2.6)
P 		335.9
(-3)
P 		598.8
(-0)
P 		664.6
(0.8)
P 		526
avr 698.8
(3) 		695.4
(2.9) 		386.5
(-3) 		414.2
(-2.5) 		645.5
(2) 		634.9
(1.8) 		312
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21046
Sequence Type Exemplar sequence
Representative Public ID CEK015E6R NCBI
Target Description CEK015E6R_rc /REP_DB=TREMBL Accession /GB=D27618 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065417 NCBI Caenorhabditis elegans protein KINase family member (kin-19) (kin-19) mRNA, complete cds. 11/11 None
C03C10.1.1 ENSEMBL cdna:known chromosome:CEL140:III:4083979:4086608:-1 gene:C03C10.1 11/11 A 
C03C10.1.3 ENSEMBL cdna:known chromosome:CEL140:III:4083979:4086614:-1 gene:C03C10.1 11/11 A 
C03C10.1.2 ENSEMBL cdna:known chromosome:CEL140:III:4083979:4086608:-1 gene:C03C10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4084050-4084703(-) 100.0 100.0
Public Domain and Genome References
Gene Title casein Kinase I
Gene Symbol kin-19
Ensembl C03C10.1
Entrez Gene 175524 Entrez gene
SwissProt P42168 EMBL-EBI
WormBase CE00872 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19605_AT casein kinase, putative at
ATH1-121501:258300_AT casein kinase, putative at
CANINE:1605348_AT similar to casein kinase 1, alpha 1 isoform 1 cfa
CANINE:1602119_S_AT similar to casein kinase 1, alpha 1 isoform 1 cfa
CANINE:1595834_S_AT similar to casein kinase 1, alpha 1 isoform 1 cfa
CANINE:1595833_AT similar to casein kinase 1, alpha 1 isoform 1 cfa
CANINE:1586893_AT similar to casein kinase 1, alpha 1 isoform 1 cfa
CANINE_2:CFA.15058.1.S1_AT similar to casein kinase 1, alpha 1 isoform 1 cfa
CANINE_2:CFA.15058.1.S1_S_AT similar to casein kinase 1, alpha 1 isoform 1 cfa
CANINE_2:CFA.15058.2.A1_S_AT similar to casein kinase 1, alpha 1 isoform 1 cfa
CANINE_2:CFA.2931.1.S1_AT similar to casein kinase 1, alpha 1 isoform 1 cfa
DROSOPHILA_2:1623403_S_AT Casein kinase I dm
DROSGENOME1:143778_AT Casein kinase I dm
CHICKEN:GGA.3287.1.S1_A_AT casein kinase 1, alpha 1 gga
CHICKEN:GGA.3287.2.S2_AT casein kinase 1, alpha 1 gga
HG-U133A:208867_S_AT casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:208867_S_AT casein kinase 1, alpha 1 hs
HG-U133A_2:208867_S_AT casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:206562_S_AT casein kinase 1, alpha 1 hs
HG-U133A_2:206562_S_AT casein kinase 1, alpha 1 hs
HG-U133A:206562_S_AT casein kinase 1, alpha 1 hs
HG-FOCUS:206562_S_AT casein kinase 1, alpha 1 hs
HG-U95AV2:40184_AT casein kinase 1, alpha 1 hs
HU35KSUBB:RC_T35289_AT casein kinase 1, alpha 1 hs
HU35KSUBD:RC_N51944_AT casein kinase 1, alpha 1 hs
HUGENEFL:L37042_AT casein kinase 1, alpha 1 hs
U133_X3P:G7770258_RC_3P_A_AT casein kinase 1, alpha 1 hs
U133_X3P:G4503088_3P_X_AT casein kinase 1, alpha 1 hs
U133_X3P:G4503088_3P_A_AT casein kinase 1, alpha 1 hs
U133_X3P:HS.84264.3.A1_3P_S_AT casein kinase 1, alpha 1 hs
U133_X3P:HS.144477.0.S2_3P_X_AT casein kinase 1, alpha 1 hs
U133_X3P:HS.144477.0.S2_3P_S_AT casein kinase 1, alpha 1 hs
U133_X3P:208865_3P_AT casein kinase 1, alpha 1 hs
HG-U133A_2:208866_AT casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:208866_AT casein kinase 1, alpha 1 hs
HG-U133A:208866_AT casein kinase 1, alpha 1 hs
HG-U133A_2:208865_AT casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:208865_AT casein kinase 1, alpha 1 hs
HG-U133A:208865_AT casein kinase 1, alpha 1 hs
HG-U133A_2:213086_S_AT casein kinase 1, alpha 1 hs
HG-FOCUS:213086_S_AT casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:213086_S_AT casein kinase 1, alpha 1 hs
HG-U133A:213086_S_AT casein kinase 1, alpha 1 hs
HG-U133A_2:213860_X_AT casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:213860_X_AT casein kinase 1, alpha 1 hs
HG-U133A:213860_X_AT casein kinase 1, alpha 1 hs
HG-U95E:73359_AT casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:235464_AT Casein kinase 1, alpha 1 hs
HG-U133B:235464_AT Casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:243338_AT Casein kinase 1, alpha 1 hs
HG-U133B:243338_AT Casein kinase 1, alpha 1 hs
HG-U95AV2:37108_AT Casein kinase 1, alpha 1 hs
HU35KSUBA:RC_AA427456_AT Casein kinase 1, alpha 1 hs
HU35KSUBC:RC_AA393806_S_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS2.438760.1.A2_3P_S_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS2.438760.1.A1_3P_X_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS2.438760.1.A1_3P_S_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS2.438760.1.A1_3P_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS.318381.0.S1_3P_X_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS.318381.0.S1_3P_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS.293668.0.A1_3P_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS.144477.0.S3_3P_X_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS.144477.0.S3_3P_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS.104216.0.A1_3P_AT Casein kinase 1, alpha 1 hs
U133_X3P:240221_3P_AT Casein kinase 1, alpha 1 hs
U133_X3P:1556006_3P_S_AT Casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:1556006_S_AT Casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:1556007_S_AT Casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:240221_AT Casein kinase 1, alpha 1 hs
HG-U133B:240221_AT Casein kinase 1, alpha 1 hs
HG-U95C:61117_AT Casein kinase 1, alpha 1 hs
HG-U95E:69549_AT Casein kinase 1, alpha 1 hs
HG-U95E:80834_AT Casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:226920_AT Casein kinase 1, alpha 1 hs
HG-U133B:226920_AT Casein kinase 1, alpha 1 hs
HG-U133_PLUS_2:242467_AT Casein kinase 1, alpha 1 hs
HG-U133B:242467_AT Casein kinase 1, alpha 1 hs
HG-U95E:81830_R_AT Casein kinase 1, alpha 1 hs
HG-U95E:90710_AT Casein kinase 1, alpha 1 hs
HU35KSUBA:AA293634_AT Casein kinase 1, alpha 1 hs
HU35KSUBC:RC_AA251288_AT Casein kinase 1, alpha 1 hs
HU35KSUBC:RC_AA252029_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS.283738.1.A1_3P_AT Casein kinase 1, alpha 1 hs
U133_X3P:HS.304332.0.A1_3P_AT Casein kinase 1, alpha 1 hs
MOE430A:1424827_A_AT casein kinase 1, alpha 1 mm
MOUSE430A_2:1424827_A_AT casein kinase 1, alpha 1 mm
MOUSE430_2:1424827_A_AT casein kinase 1, alpha 1 mm
MU11KSUBA:AA617387_G_AT casein kinase 1, alpha 1 mm
MU11KSUBA:AA617387_AT casein kinase 1, alpha 1 mm
MU11KSUBB:MSA.2645.0_F_AT casein kinase 1, alpha 1 mm
MG-U74AV2:99650_AT casein kinase 1, alpha 1 mm
MG-U74AV2:93076_AT casein kinase 1, alpha 1 mm
MG-U74CV2:135338_S_AT casein kinase 1, alpha 1 mm
MG-U74CV2:135097_AT casein kinase 1, alpha 1 mm
MG-U74CV2:170301_AT casein kinase 1, alpha 1 mm
MOE430A:1451497_AT casein kinase 1, alpha 1 mm
MOUSE430A_2:1451497_AT casein kinase 1, alpha 1 mm
MOUSE430_2:1451497_AT casein kinase 1, alpha 1 mm
MOE430A:1428537_AT casein kinase 1, alpha 1 mm
MOUSE430A_2:1428537_AT casein kinase 1, alpha 1 mm
MOUSE430_2:1428537_AT casein kinase 1, alpha 1 mm
MOE430B:1430529_AT casein kinase 1, alpha 1 mm
MOUSE430_2:1430529_AT casein kinase 1, alpha 1 mm
MOE430B:1456216_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
MOUSE430_2:1456216_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
MU11KSUBB:MSA.19389.0_F_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
MU11KSUBB:MSA.5126.0_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
MU11KSUBB:MSA.5126.0_G_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
MU19KSUBA:TC19237_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
MU19KSUBB:TC30913_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
MU19KSUBB:TC32111_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
MU19KSUBB:TC32111_G_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
MU19KSUBC:TC35287_S_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
MU19KSUBC:TC38934_AT Casein kinase 1, alpha 1 (Csnk1a1), mRNA mm
RG-U34A:U77583_AT casein kinase 1, alpha 1 rn
RAE230A:1369312_A_AT casein kinase 1, alpha 1 rn
RAT230_2:1369312_A_AT casein kinase 1, alpha 1 rn
RG-U34A:RC_AI235291_AT casein kinase 1, alpha 1 rn
RAE230A:1374392_AT Casein kinase 1, alpha 1 rn
RAT230_2:1374392_AT Casein kinase 1, alpha 1 rn
RAE230A:1374646_AT Casein kinase 1, alpha 1 rn
RAT230_2:1374646_AT Casein kinase 1, alpha 1 rn
RAE230A:1389859_AT Casein kinase 1, alpha 1 rn
RAT230_2:1389859_AT Casein kinase 1, alpha 1 rn
RAE230B:1394689_AT Casein kinase 1, alpha 1 rn
RAT230_2:1394689_AT Casein kinase 1, alpha 1 rn
RAE230B:1394818_AT Casein kinase 1, alpha 1 rn
RAT230_2:1394818_AT Casein kinase 1, alpha 1 rn
RG-U34C:RC_AA819816_AT Casein kinase 1, alpha 1 rn
RG-U34B:RC_AA955819_AT Casein kinase 1, alpha 1 rn
RG-U34B:RC_AA955819_G_AT Casein kinase 1, alpha 1 rn
RG-U34B:RC_AI030738_AT Casein kinase 1, alpha 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84685 Hypothetical protein C03C10.1 [Caenorhabditis elegans] ref|NP_497818.1| protein KINase family member (kin-19) [Caenorhabditis elegans] sp|P42168|YKL1_CAEEL Putative casein kinase I C03C10.1 in chromosome III 1.0E-178
blast CAE72893 Hypothetical protein CBG20206 [Caenorhabditis briggsae] 1.0E-173
blast AAF00540 casein kinase I [Ancylostoma caninum] 1.0E-165
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 3.1E-36
Sequence
Target Sequence 
>C. ELEGANS:174850_AT
ttgtcttttcttgggctaacatgcctctttaactgtgtgctgaaaattgtggaatgtttt
gttgtattttatcttttaaccaattttttaactaaagatgaatactctctacttttcgca
gtttcagcacttttatttgtcgttttataaatagtctcatcatcttctcctactctcttt
tatttccttcttttccattttagtaggatttttattcccccatttttcgaatcgttttga
cctttttttcttgaatgcctccctatcaacataccaatatatttttctctctattccccc
ctaccatttttccctttcctttcttcgtaatgatgaaaatgtcccaatgtcgggcactca
aaaattaaaaaaaatactgaaaaagtcaagtggccgaacatgtttttgggtataaccggc
tcaccttgacacacccaccccctctcttttggctccaaatgcctctcaataccctcccat
aacttccccacccagaaatcagagccccactccgttcttttttgtgtgtaatcaataaat
tgtcgtaattctcatcacattgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCTTTTCTTGGGCTAACATGCC 602 705 67 Antisense
CATGCCTCTTTAACTGTGTGCTGAA 77 211 86 Antisense
AATACTCTCTACTTTTCGCAGTTTC 229 173 167 Antisense
GTTTCAGCACTTTTATTTGTCGTTT 145 451 187 Antisense
TGACCTTTTTTTCTTGAATGCCTCC 96 563 304 Antisense
CAATATATTTTTCTCTCTATTCCCC 314 181 341 Antisense
CCCTTTCCTTTCTTCGTAATGATGA 353 259 378 Antisense
AAATGTCCCAATGTCGGGCACTCAA 301 121 403 Antisense
TTTGGCTCCAAATGCCTCTCAATAC 35 665 514 Antisense
CACTCCGTTCTTTTTTGTGTGTAAT 189 195 574 Antisense
GTCGTAATTCTCATCACATTGTTTT 511 473 608 Antisense
Sequence Source Affymetrix Proprietary Database