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[174847_at]

Description CEK028F7R_rc /REP_DB=TREMBL Accession /GB=D33285 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28f7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 41      6grp_total > 26      4grp_total > 07      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 411
1 2 3 4 range
A 716.5
(3)
P 		439.4
(-3)
P 		596.5
(0.4)
P 		458.7
(-2.6)
P 		277
B 827.9
(3)
P 		607.1
(-3)
P 		668.4
(-1.3)
P 		697.1
(-0.6)
P 		221
C 625.1
(-3)
P 		629.8
(-2.9)
P 		679
(-1.6)
P 		850.2
(3)
P 		225
avr 723.2
(3) 		558.8
(-3) 		648
(0.3) 		668.7
(1) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 628.3
(-0.2)
P 		667.3
(1)
P 		543.1
(-3)
P 		624.7
(-0.4)
P 		648.4
(0.4)
P 		728.9
(3)
P 		186
B 906.9
(3)
P 		898.7
(2.8)
P 		723.6
(-0.9)
P 		665.1
(-2.1)
P 		621.8
(-3)
P 		744.3
(-0.4)
P 		285
C 1015.4
(3)
P 		823.9
(0.2)
P 		738.7
(-1)
P 		701.4
(-1.6)
P 		602.7
(-3)
P 		651
(-2.3)
P 		413
avr 850.2
(3) 		796.6
(1.6) 		668.5
(-1.8) 		663.7
(-2) 		624.3
(-3) 		708.1
(-0.8) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 260.9
(3)
P 		95.4
(-2.1)
P 		155.9
(-0.3)
P 		67.1
(-3)
P 		194
B 264
(3)
P 		149.9
(-2.9)
P 		154.9
(-2.7)
P 		148.6
(-3)
P 		115
C 206.9
(1.1)
P 		181.1
(-0.6)
P 		236.7
(3)
P 		143.4
(-3)
P 		93
avr 243.9
(3) 		142.1
(-1.9) 		182.5
(0) 		119.7
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 115.8
(-3)
P 		237.3
(3)
P 		118.3
(-2.9)
P 		158.4
(-0.9)
P 		195.6
(0.9)
P 		177.5
(0)
P 		122
B 315.5
(3)
P 		299.1
(2.3)
P 		175.7
(-3)
P 		176.2
(-3)
P 		252.6
(0.3)
P 		277.6
(1.4)
P 		140
C 376.4
(3)
P 		251.4
(-0.2)
P 		188
(-1.8)
P 		141
(-3)
P 		195
(-1.6)
P 		217.9
(-1)
P 		235
avr 269.2
(3) 		262.6
(2.6) 		160.7
(-2.9) 		158.5
(-3) 		214.4
(0) 		224.3
(0.6) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20250
Sequence Type Exemplar sequence
Representative Public ID CEK028F7R NCBI
Target Description CEK028F7R_rc /REP_DB=TREMBL Accession /GB=D33285 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C26C6.5a ENSEMBL cdna:known chromosome:CEL140:I:7544235:7550284:-1 gene:C26C6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7544188-7544570(-) 100.0 100.0
Public Domain and Genome References
Ensembl C26C6.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96601 Hypothetical protein C26C6.5a [Caenorhabditis elegans] emb|CAB07229.1| Hypothetical protein C26C6.5a [Caenorhabditis elegans] ref|NP_492111.1| Deacetylase Complex Protein family member (dcp-66) [Caenorhabditis elegans] 0.0
blast CAD56560 Hypothetical protein C26C6.5b [Caenorhabditis elegans] emb|CAD56589.1| Hypothetical protein C26C6.5b [Caenorhabditis elegans] ref|NP_871831.1| Deacetylase Complex Protein family member (dcp-66) [Caenorhabditis elegans] 0.0
blast CAE66572 Hypothetical protein CBG11888 [Caenorhabditis briggsae] 1.0E-170
Sequence
Target Sequence 
>C. ELEGANS:174847_AT
atatgcttcttctcttatagtcttgattttgctcactttttttgatatttcaatttcagt
gatgttcaaagttcagattatatttgaagaagtatacatctttaattccaaaattagagg
gtgttgagttttttttctaaaactatcgaacggatgtggttttataatttctaaattaaa
taactatttcgctttctttttcccttaatttccccctctctcgttcatatttaacttatt
cttaaaccgtttttctctcctttttctgaatgttcttaagacttagcgtcgtcatctatt
catgtgattttcttctgttttatgaaaattgcccttctctcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGCTTCTTCTCTTATAGTCTTG 401 21 15 Antisense
ATAGTCTTGATTTTGCTCACTTTTT 166 23 31 Antisense
TTGCTCACTTTTTTTGATATTTCAA 139 703 43 Antisense
GAAGTATACATCTTTAATTCCAAAA 206 335 103 Antisense
AACTATCGAACGGATGTGGTTTTAT 463 137 155 Antisense
CCCTCTCTCGTTCATATTTAACTTA 502 259 228 Antisense
TTTTCTCTCCTTTTTCTGAATGTTC 383 677 265 Antisense
GAATGTTCTTAAGACTTAGCGTCGT 116 331 282 Antisense
GACTTAGCGTCGTCATCTATTCATG 35 373 294 Antisense
GTCGTCATCTATTCATGTGATTTTC 464 473 302 Antisense
TTATGAAAATTGCCCTTCTCTCGTG 683 677 334 Antisense
Sequence Source Affymetrix Proprietary Database