[Home] | [Total List]

[174846_at]

Description CEK097E5R_rc /REP_DB=TREMBL Accession /GB=D72338 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk97e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 94      6grp_total > 79      4grp_total > 60      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 642.9
(3)
P 		575.3
(-3)
P 		593.7
(-1.4)
P 		608.2
(-0.1)
P 		68
B 556.3
(-2.1)
P 		629.4
(0.4)
P 		702.9
(3)
P 		530.5
(-3)
P 		172
C 697.2
(1.7)
P 		580.8
(-0.9)
P 		753.6
(3)
P 		488.4
(-3)
P 		265
avr 632.1
(0.8) 		595.2
(-0.8) 		683.4
(3) 		542.4
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 645
1 2 3 4 5 6 range
A 297.1
(-3)
P 		346.4
(-2.2)
P 		417
(-1.1)
P 		303.9
(-2.9)
P 		510.9
(0.4)
P 		677.1
(3)
P 		380
B 442.3
(-2.2)
P 		425.9
(-2.4)
P 		402.8
(-2.6)
P 		368.6
(-3)
P 		562
(-0.9)
P 		929.1
(3)
P 		561
C 400.6
(-1.8)
P 		418.8
(-1.6)
P 		306.1
(-2.8)
P 		284.5
(-3)
P 		503.7
(-0.8)
P 		875
(3)
P 		591
avr 380
(-2.3) 		397
(-2.1) 		375.3
(-2.3) 		319
(-3) 		525.5
(-0.6) 		827.1
(3) 		508
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 234.1
(3)
P 		124.9
(-1.5)
P 		155.2
(-0.3)
P 		89
(-3)
P 		145
B 177.4
(3)
P 		155.5
(1)
P 		162.9
(1.6)
P 		113
(-3)
P 		64
C 230.8
(1.9)
P 		167
(-0.2)
P 		262.6
(3)
P 		82.4
(-3)
P 		180
avr 214.1
(3) 		149.1
(-0.3) 		193.6
(2) 		94.8
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 54.8
(-3)
P 		123.2
(0.7)
P 		90.8
(-1)
P 		77.1
(-1.8)
P 		154.2
(2.4)
P 		164.9
(3)
P 		110
B 153.9
(-1.6)
P 		141.8
(-1.9)
P 		97.8
(-3)
P 		97.6
(-3)
P 		228.3
(0.2)
P 		346.5
(3)
P 		249
C 148.5
(-0.7)
P 		127.8
(-1.2)
P 		77.9
(-2.5)
P 		57.2
(-3)
P 		163
(-0.3)
P 		292.9
(3)
P 		236
avr 119.1
(-1.7) 		130.9
(-1.3) 		88.8
(-2.6) 		77.3
(-3) 		181.8
(0.3) 		268.1
(3) 		191
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174846_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21165
Sequence Type Exemplar sequence
Representative Public ID CEK097E5R NCBI
Target Description CEK097E5R_rc /REP_DB=TREMBL Accession /GB=D72338 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk97e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065769 NCBI Caenorhabditis elegans R02F2.7 (R02F2.7) mRNA, complete cds. 11/11 A 
SNAP00000033069 ENSEMBL cdna:SNAP chromosome:CEL140:III:5480353:5483729:-1 11/11 None
GENEFINDER00000033081 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5480353:5483729:-1 11/11 None
R02F2.7 ENSEMBL cdna:known chromosome:CEL140:III:5480269:5483740:-1 gene:R02F2.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5480286-5481436(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02F2.7
Entrez Gene 175754 Entrez gene
SwissProt Q21649 EMBL-EBI
WormBase CE29818 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50723 Hypothetical protein R02F2.7 [Caenorhabditis elegans] ref|NP_498170.2| R02F2.7 [Caenorhabditis elegans] 0.0
blast T16655 hypothetical protein R02F2.7 - Caenorhabditis elegans 0.0
blast CAE61361 Hypothetical protein CBG05202 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174846_AT
gtattttgcaatgctgactgcatcaatcattggagacgcagtattctatggatcagacag
tctacttgccatgtcaaaactacattcactggccgataaaaatgcatccgcgttgctcgc
cacgaatcttccagttgttgagagaacccgatacaagaagttcctttctacgatcacgag
ggcttcgaagcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTTTGCAATGCTGACTGCATCA 474 453 81 Antisense
GACTGCATCAATCATTGGAGACGCA 601 375 96 Antisense
GGAGACGCAGTATTCTATGGATCAG 488 517 112 Antisense
GGATCAGACAGTCTACTTGCCATGT 566 511 130 Antisense
CAGTCTACTTGCCATGTCAAAACTA 185 207 138 Antisense
GTCAAAACTACATTCACTGGCCGAT 61 463 153 Antisense
ATAAAAATGCATCCGCGTTGCTCGC 631 23 176 Antisense
TCTTCCAGTTGTTGAGAGAACCCGA 106 617 207 Antisense
GAGAACCCGATACAAGAAGTTCCTT 240 391 222 Antisense
GAAGTTCCTTTCTACGATCACGAGG 368 337 237 Antisense
ACGATCACGAGGGCTTCGAAGCGAA 248 91 250 Antisense
Sequence Source Affymetrix Proprietary Database